PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_031200

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NF-YC

Protein Properties

Length: 128aa MW: 14557.1 Da PI: 10.3383

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_031200	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	45.3	2e-14	8	93	14	98
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 ++ + ++P rik+++k d+d+k+i +ea l+s + +lf+ l+ r+ l a e+kr+t++ + av+r + + dfl+d p DCAR_031200 8 NETIQPTFPSGRIKRMMKLDKDIKKINSEALFLVSCSLDLFMESLAKRCALVAIEKKRKTVNLDYLRIAVKRHQpTSDFLLDSLPM 93 4455789*************************************************************9976489***9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.6E-18	7	77	IPR009072	Histone-fold
SuperFamily	SSF47113	2.51E-17	8	102	IPR009072	Histone-fold
Pfam	PF00808	2.3E-13	14	77	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MREEADENET IQPTFPSGRI KRMMKLDKDI KKINSEALFL VSCSLDLFME SLAKRCALVA 60 IEKKRKTVNL DYLRIAVKRH QPTSDFLLDS LPMPSAKSPP LPTRPSDDKL LPPRTRRIDH 120 IFHKAAS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017224296.1	1e-87	PREDICTED: dr1-associated corepressor
Refseq	XP_017224297.1	1e-87	PREDICTED: dr1-associated corepressor
TrEMBL	A0A175YKG0	3e-86	A0A175YKG0_DAUCS; Uncharacterized protein
STRING	XP_002514923.1	5e-44	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11435	24	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	3e-44	nuclear factor Y, subunit C13

Link Out ? help Back to Top
Phytozome	DCAR_031200