PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031280
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 546aa    MW: 62393.7 Da    PI: 5.6515
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031280genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3345.2e-114725333295
                  --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
           B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                  +++t++  ++  +sW + +    + +r+ ++kGW+ F ++n+L +gD+v+F+l+ +  +fe  +k
  DCAR_031280 472 SGMTVI-FNKGRNSWPIGV--IETNNRIRFSKGWNAFFRDNDLGVGDSVTFTLQPDvLSFEIAIK 533
                  444554.456779******..666667889**********************9866677766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-529112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-636112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-7167252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-7167252IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.319209263IPR003340B3 DNA binding domain
SuperFamilySSF1019361.37E-5288359IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-4289362IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.428303353IPR003340B3 DNA binding domain
SuperFamilySSF1019361.57E-12439522IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-12440524IPR015300DNA-binding pseudobarrel domain
CDDcd100173.86E-10441532No hitNo description
PROSITE profilePS5086310.602442536IPR003340B3 DNA binding domain
PfamPF023621.0E-8454532IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MDYSDHSSEE YSSDDSLYGE IDGKSTEKRS QARIKARTVP YGFHDRHGRY KHPKIKLLCT  60
EGFKYKCRYD REEGKIVGLQ RFFRDHWVTQ NSIITFQWPG GRSFLVRIYK PTGIEADYNW  120
FNPRKCQSFK DSFDINDPKY SSGGGMVEEE KAKALLMFNG KREQVGMYEM VVTESCLEKN  180
NKTLEIKGHM QEMCEQWNSG DVIKIKFVNK VWKIEITKKE GVTFFDPGWF EFCDEAALMA  240
GDTLVLRTCK ERLELLACVL KMTELQLIEK SIGCDQTGIS FLQFGHDLLI NDGVMVDTVL  300
CGGREWQVKY SKDTKMLSGL LPIMREYEVK IRDTIFFTVA RDGESVVKIF RRDGTEIRYC  360
KAVVEDGKVQ EPFLQREEVS HVEVIDVSDD EAPMDIETDD HAHVVTEIMQ ASHVDGRSHG  420
VDVSDDEAPM DIETDHHALV FTELMQASHV DGRSHGVYLG KSLESAARDW KSGMTVIFNK  480
GRNSWPIGVI ETNNRIRFSK GWNAFFRDND LGVGDSVTFT LQPDVLSFEI AIKYADKKGG  540
MKNNV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A175YE960.0A0A175YE96_DAUCS; Uncharacterized protein