PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_031326

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 175aa MW: 19432.9 Da PI: 10.3812

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_031326	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	89.6	2.8e-28	7	67	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + ++lkcprCds++tkfCy+nn sqPry Ck+C+r+Wt+GG lr++P +++r+ k+s+ DCAR_031326 7 PPQNLKCPRCDSEDTKFCYFNNNKSSQPRYRCKKCNRFWTQGGKLRDIPSSAAKRRVKRSQ 67 67899**************************************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-16	7	65	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-27	9	65	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	24.008	11	65	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	13	49	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MEALIKPPQN LKCPRCDSED TKFCYFNNNK SSQPRYRCKK CNRFWTQGGK LRDIPSSAAK 60 RRVKRSQDSF TSTISSPPAP LLSSITFVAI DFDRAGDLNL TRPRPNQPRI EFVRTDINSL 120 SITKSRAPPQ HAQGQKYYAQ PNQNVFQASN GQGIPAIHYM GGATSDPSMS SYGA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017227898.1	1e-128	PREDICTED: dof zinc finger protein DOF4.4-like
TrEMBL	A0A175YE34	1e-126	A0A175YE34_DAUCS; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45610.1	2e-23	Dof family protein

Link Out ? help Back to Top
Phytozome	DCAR_031326