PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031338
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HSF
Protein Properties Length: 469aa    MW: 53120.8 Da    PI: 5.8185
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031338genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind70.14.6e-2268126260
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                   F+kk+y ++ d+e++ +iswse+g sfv+ d+ +f  ++Lpk+Fkh nf+SF+RQLn+Y
   DCAR_031338  68 FIKKIYGMVGDAETDGIISWSESGMSFVIRDQYKFCVEILPKHFKHANFSSFIRQLNTY 126
                   9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.72E-2064127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.2E-3764227IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.3E-3064155IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.7E-126891IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-2468227IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-12106118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-12119131IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.3E-30195227IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MTSVMDGFTG LDQNSLCSES ELEALFAAAS DENIAHEVSL KKEAIVVVDD EEVPQPLKGL  60
YEDGPTPFIK KIYGMVGDAE TDGIISWSES GMSFVIRDQY KFCVEILPKH FKHANFSSFI  120
RQLNTYVSIF FSFLVILVYN IPTCCPAGCH IVEQWRLRLA VLRSRVRFPG HSGSMWATCS  180
KHEWSSVLVC PPGLVENFKK LSLERWEYAN EGFQKGKDHL LKNIKRKKHQ PDQQVPQDGK  240
NSQLSLYHEN LKKEAELEKL KSDTEKLRTE LLIIQKEQES ADNYLLSVKE RLIRTEHKQQ  300
QMFICMARAF KNPLFNEILM QQLREKEALD TAGTSKKQKL IAPQCNKSLV EAIYYAGGSQ  360
AKDDFTMIDT EAQKAYFHNE AKNPVVQSQK VNEVLATKPS DIALDNCLLV ENLLADDVVS  420
ETKAATEQAN VHSKVVLELE ELITKVSANW EVSMKEMVEQ AVCLQSQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-15681262078Heat shock factor protein 1
5d5u_B1e-14681262987Heat shock factor protein 1
5d5v_B1e-14681262987Heat shock factor protein 1
5d5v_D1e-14681262987Heat shock factor protein 1
5hdg_A6e-15681261068Heat shock factor protein 1
5hdn_A6e-15681261068Heat shock factor protein 1
5hdn_B6e-15681261068Heat shock factor protein 1
5hdn_C6e-15681261068Heat shock factor protein 1
5hdn_D6e-15681261068Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017227936.10.0PREDICTED: heat stress transcription factor A-7a-like
RefseqXP_017227940.10.0PREDICTED: heat stress transcription factor A-7a-like
TrEMBLA0A175YBY10.0A0A175YBY1_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-24heat shock transcription factor A2