PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031340
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HSF
Protein Properties Length: 465aa    MW: 52702.3 Da    PI: 5.8185
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031340genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind70.14.6e-2264122260
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                   F+kk+y ++ d+e++ +iswse+g sfv+ d+ +f  ++Lpk+Fkh nf+SF+RQLn+Y
   DCAR_031340  64 FIKKIYGMVGDAETDGIISWSESGMSFVIRDQYKFCVEILPKHFKHANFSSFIRQLNTY 122
                   9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.2E-3760223IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-2060123IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.2E-3060151IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-2464223IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-126487IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-12102114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-12115127IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.2E-30191223IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDGFTGLDQN SLCSESELEA LFAAASDENI AHEVSLKKEA IVVVDDEEVP QPLKGLYEDG  60
PTPFIKKIYG MVGDAETDGI ISWSESGMSF VIRDQYKFCV EILPKHFKHA NFSSFIRQLN  120
TYVSIFFSFL VILVYNIPTC CPAGCHIVEQ WRLRLAVLRS RVRFPGHSGS MWATCSKHEW  180
SSVLVCPPGL VENFKKLSLE RWEYANEGFQ KGKDHLLKNI KRKKHQPDQQ VPQDGKNSQL  240
SLYHENLKKE AELEKLKSDT EKLRTELLII QKEQESADNY LLSVKERLIR TEHKQQQMFI  300
CMARAFKNPL FNEILMQQLR EKEALDTAGT SKKQKLIAPQ CNKSLVEAIY YAGGSQAKDD  360
FTMIDTEAQK AYFHNEAKNP VVQSQKVNEV LATKPSDIAL DNCLLVENLL ADDVVSETKA  420
ATEQANVHSK VVLELEELIT KVSANWEVSM KEMVEQAVCL QSQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-15641222078Heat shock factor protein 1
5d5u_B1e-14641222987Heat shock factor protein 1
5d5v_B1e-14641222987Heat shock factor protein 1
5d5v_D1e-14641222987Heat shock factor protein 1
5hdg_A6e-15641221068Heat shock factor protein 1
5hdn_A6e-15641221068Heat shock factor protein 1
5hdn_B6e-15641221068Heat shock factor protein 1
5hdn_C6e-15641221068Heat shock factor protein 1
5hdn_D6e-15641221068Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017227936.10.0PREDICTED: heat stress transcription factor A-7a-like
RefseqXP_017227940.10.0PREDICTED: heat stress transcription factor A-7a-like
TrEMBLA0A175YBX20.0A0A175YBX2_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-24heat shock transcription factor A2