PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031503
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 225aa    MW: 25731.7 Da    PI: 6.9151
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031503genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.2e-10127218395
                  EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                   + +ps++l+  + +++p +f     + k ++ +++++ + g sWe++++ r+ ++++ + +GW eF ++ +Lk+gD + F   ++s+ ++++ 
  DCAR_031503 127 IEVMPSHMLRYcHGVCVPTQFQPLTASWK-KKDKIRVY-RGGMSWEFEIRKRRPGNQTAIHGGWIEFRQEIELKVGDCCFFWCLDESNHHFRLE 218
                  55678888887667788888853332222.22367755.599*******99999999************************9555555544555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-13121215IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-11124223IPR015300DNA-binding pseudobarrel domain
CDDcd100174.74E-11124221No hitNo description
SMARTSM010190.0051125223IPR003340B3 DNA binding domain
PfamPF023622.6E-8128219IPR003340B3 DNA binding domain
PROSITE profilePS508639.319166223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MQQDNLSGSW ILSIRNGYQI HVVYDRQSMK LLGVSDLFSD FGLIGGEILL FESVDLRVFN  60
VYIMGEDGCE IQYPEVVHSS QICCPVPVLI SDGGWKFVNF ISLAFPTEDK VVSSLASTLR  120
QCLHFKIEVM PSHMLRYCHG VCVPTQFQPL TASWKKKDKI RVYRGGMSWE FEIRKRRPGN  180
QTAIHGGWIE FRQEIELKVG DCCFFWCLDE SNHHFRLEIV KSSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154176KKKDKIRVYRGGMSWEFEIRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A175YBE81e-165A0A175YBE8_DAUCS; Uncharacterized protein