PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031537
Common NameC-HAP2B
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YA
Protein Properties Length: 304aa    MW: 33627.4 Da    PI: 6.5881
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031537genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.61.2e-29157213158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQy++Il+RR++Rak+e ++kl +k rkpylheSRh+hA+rR+R+sgGrF
  DCAR_031537 157 QEPVYVNAKQYRAILRRRESRAKAELKRKL-IKDRKPYLHESRHRHAIRRARASGGRF 213
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.9E-33155216IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.358156216IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.3E-25158213IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.8E-22159181IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860161181IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.8E-22190213IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MMHPKPRSSN QLEYGSYNLP PISSEPWWQS LGKNSTNTDG IQENGSDSSS QSVDGSEDED  60
DGSNESQNTG NMPSDPNFAQ EHQNQHVATN VPPGNAENPP QASQLELAGQ SVAYDPNAYY  120
DPYYYRGMMA AYGQPLVQPH LLDTHHNRMP LPIDMTQEPV YVNAKQYRAI LRRRESRAKA  180
ELKRKLIKDR KPYLHESRHR HAIRRARASG GRFAKKSDTD ASENPQTSEV KGVNISSSVS  240
AQSANSSGSQ VFPSNCNLNS HQEARGPDAT YVNNSGGYEN QEAFRVSTYD LHSNREGGSV  300
CQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-17156221166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197206RHRHAIRRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1046140.0AB104614.1 Daucus carota C-HAP2B mRNA for CCAAT-box binding factor HAP2 homolog, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017227602.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
TrEMBLA0A175YBN80.0A0A175YBN8_DAUCS; Uncharacterized protein
TrEMBLQ76FX00.0Q76FX0_DAUCA; CCAAT-box binding factor HAP2 homolog
STRINGPGSC0003DMT4000277851e-76(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.18e-27nuclear factor Y, subunit A9