PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031645
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 473aa    MW: 54225.4 Da    PI: 5.8125
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031645genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.52.5e-133854651699
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                  ++++k+  e+  ++  ++ t+   ++ + sW + +  +k+ +r+ +++GW+ Fv++n+Lk gD+v F+l ++ ++fe ++k+ +k
  DCAR_031645 385 MYISKSM-ESAAKNW-NTSTVLTFNKGSSSWPIGI--TKTNNRIHFSRGWNAFVRDNDLKKGDTVNFTLGEDgTSFETTIKFSKK 465
                  5555543.3333332.333566667788*******..99999999************************9999***999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-6140194IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-5147194IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.938154206IPR003340B3 DNA binding domain
CDDcd100171.49E-8363460No hitNo description
Gene3DG3DSA:2.40.330.105.1E-12363455IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0023364466IPR003340B3 DNA binding domain
SuperFamilySSF1019361.88E-11366454IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.871370464IPR003340B3 DNA binding domain
PfamPF023621.4E-10385464IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEVNLAPKRR KIKSNSDIKT EICLQLVRLN RKKRWQNGWV LKHVNAEKVR QTLRERIEAD  60
YNWFAPRRCQ TFRETVELGG SESMVSTERV EDQKTKALIM FNAEHGQGPY YEMEITGTCL  120
CKDSKTQQIK EDMRGLYGKW LQGDIISIKL QETEWRIEII KTGEVFNFGP GWFKFCEEAA  180
LKEGDRLVLR TYDDPLEVFA CVFKHEDMQL IQESLGKEET GVSFFQYGND LLIRDGVMIS  240
PVVVTKYYEE ILQTVERVLC GDREWQLGYC KHNKTLTGFL PIVREYAVTA ADTIFFSVTP  300
GGESSVKIFQ NDGMEIKYTD FVVGKEIAPE ARYSREKERD IEVIVISDED GSVENEAVCS  360
GLSFAEVLQS SHVDGRSHGV IRSYMYISKS MESAAKNWNT STVLTFNKGS SSWPIGITKT  420
NNRIHFSRGW NAFVRDNDLK KGDTVNFTLG EDGTSFETTI KFSKKREDKD QE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A175YB190.0A0A175YB19_DAUCS; Uncharacterized protein