PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031773
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LSD
Protein Properties Length: 143aa    MW: 14714.1 Da    PI: 7.9177
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031773genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.2e-132448125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr+lL YP GA+sV+Ca+C++V
  DCAR_031773 24 CSGCRNLLLYPVGATSVCCAVCNAV 48
                 ************************9 PP
2zf-LSD146.84.7e-156387125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 CggC+tlL+Y rGA+sV+C++C+tV
  DCAR_031773 63 CGGCHTLLMYIRGATSVQCSCCHTV 87
                 ************************9 PP
3zf-LSD140.73.9e-13101125125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+Cr +L+Y +GA+sV+Ca+C++V
  DCAR_031773 101 CGNCRMMLMYQYGARSVKCAVCNFV 125
                  ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.108.5E-420123No hitNo description
TIGRFAMsTIGR010539.5E-132151IPR005735Zinc finger, LSD1-type
SuperFamilySSF486955.02E-524122IPR011031Multihaem cytochrome
PfamPF069431.4E-102448IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.4E-156089IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126387IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.3E-1298126IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-12101125IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MPVPLAPYPT PTPPANGSQS QLVCSGCRNL LLYPVGATSV CCAVCNAVTA VPPPGTEMAQ  60
LVCGGCHTLL MYIRGATSVQ CSCCHTVNLA LEANQVAHVN CGNCRMMLMY QYGARSVKCA  120
VCNFVTSAGA SSTSTAEQKF SS*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017228403.12e-98PREDICTED: protein LOL1
SwissprotQ93ZB11e-79LOL1_ARATH; Protein LOL1
TrEMBLA0A175YB495e-97A0A175YB49_DAUCS; Uncharacterized protein
STRINGcassava4.1_018557m2e-88(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-59lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]