PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_031787

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 240aa MW: 26063.3 Da PI: 6.5021

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_031787	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.9	1.2e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+q ++e DCAR_031787 4 SCNGCRVLRKGCTDDCSIRPCLqwiasPESQAHATVFLAKFYGRAGLMNLINAGPDHLRPAVFRSLLYEACGRIVNPVYGSVGLLWSGKWQLCQNAVE 101 6************************************************************************************************9 PP DUF260 94 lallke 99 ++l+++ DCAR_031787 102 AVLRGD 107 988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.794	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-25	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MRMSCNGCRV LRKGCTDDCS IRPCLQWIAS PESQAHATVF LAKFYGRAGL MNLINAGPDH 60 LRPAVFRSLL YEACGRIVNP VYGSVGLLWS GKWQLCQNAV EAVLRGDPIT QVVAIDAAEA 120 NNGPPLKAYD IRHVHKEENN NANDLHRVRN RCKFKRPGKE ANASRSHESS LSHQSEAVMN 180 GEGESRETES FVTAETADGS PGLFGAEPQG LGAGEDHKEA ESDEIELELT LGFKCGRSV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017228394.1	1e-179	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	3e-93	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A175YBW3	1e-178	A0A175YBW3_DAUCS; Uncharacterized protein
STRING	Gorai.008G056000.1	1e-106	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-86	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	DCAR_031787