PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031903
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 409aa    MW: 45903.2 Da    PI: 6.3519
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031903genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.85.9e-11461281197
                  HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  l+++   + +++a +    +++ +s+tl +++    sW v+l++++++   ++ + W +F++a +LkegD++ F+l+g   ++++v v+
  DCAR_031903  46 LQKDHTKILNRYACKQlgLLEEMKSVTLFFKN---MSWVVNLKWDNGK--AYMDRTWYDFARASRLKEGDICAFMLSG-PPGKFRVCVY 128
                  44444444444443444644555777777776...9******887776..789***********************99.5555577665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-1030130IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.50336131IPR003340B3 DNA binding domain
SMARTSM010190.004236131IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-943130IPR015300DNA-binding pseudobarrel domain
PfamPF023625.2E-845127IPR003340B3 DNA binding domain
CDDcd100173.80E-859128No hitNo description
SuperFamilySSF1019369.02E-11145239IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-8148239IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.091149239IPR003340B3 DNA binding domain
SMARTSM010190.012150239IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-7313406IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-9313406IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.28316405IPR003340B3 DNA binding domain
PROSITE profilePS508637.81373408IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MASSTSRSFF NFSDIEVDKL CGTMFSNVYN SGLHVYDLLI SSSHLLQKDH TKILNRYACK  60
QLGLLEEMKS VTLFFKNMSW VVNLKWDNGK AYMDRTWYDF ARASRLKEGD ICAFMLSGPP  120
GKFRVCVYEP DLLTKCNEKG IGHASKVTNW FKIVNDVVLY AGQMEIPRVF MEMNGGVLEE  180
TVNLIMGDGR SVAVNFSRSQ SYLHGLKTLV DNYSIMLNDV MVFHFLSDST FAVSLFKATG  240
MEYKLNSSHD AATKKTGGIR EEEVIILSDS SGEEGEPDLG MDIDGGIADA QNLELANDGN  300
NEGNEFGDGN PLNMSFRVTL KKSHVDKRDH GAYCPRILYS IYKNWTKTTA IRLISEARTC  360
YVCVLRRGNI CRFGKGWSYF TKANEFVGGE TIEFHYVGEN TFQVDVVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A175YAP40.0A0A175YAP4_DAUCS; Uncharacterized protein