PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_031927

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

FAR1

Protein Properties

Length: 459aa MW: 53393.8 Da PI: 8.251

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_031927	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24	1.2e-07	1	32	60	90
FAR1 60 tgCkaklkvkkek.dgkwevtkleleHnHela 90 +gCk ++ v ++k +++we+t+leleHnHe++ DCAR_031927 1 MGCKVRMDVVNKKkSSHWEITSLELEHNHEVV 32 58***8776666*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.5E-5	2	32	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-31	155	248	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MGCKVRMDVV NKKKSSHWEI TSLELEHNHE VVTPSKMSLI RRERHVTAAQ RNLIKTLHAS 60 GVPPRQQMNI FGQMHGGAEQ VGFNSQHLRN VVRDFRKDNM GVNDAQAGLD LLYRLKEESG 120 GKFFIKTLLD DEQRLKCLVW VDPCSMMAYR NFGDVVVFDT TYRTNRYAMP FVLFTGVNHH 180 YQSILFGFAL VRDELKTTFE WVLSTWLEAM EDKEPLAIII DQDQAMTVAI ESQLPNTSHL 240 LCSWHISNKF PEKLATYYSK EGFKFDFNNC IYHSLTEVVF EDRWKALILK YNLEGNTWLQ 300 GLYALKHKWV EAYTRNTFSA GQKTTSRSEG MNAYFDAYVG SCTGLKDFVE GAQKALERQF 360 MREKDEDYNT YHRSRCMQMK TALEHHAASI YTKEMFRRFQ EQLVEANKYF VAKDRDRSLE 420 DVEDTFYKCY RPLTGASQRT TYLVSFNKAS LWGSCICR*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MGCKVRMDVV NKKKSSHWEI TSLELEHNHE VVTPSKMSLI RRERHVTAAQ RNLIKTLHAS  60
GVPPRQQMNI FGQMHGGAEQ VGFNSQHLRN VVRDFRKDNM GVNDAQAGLD LLYRLKEESG  120
GKFFIKTLLD DEQRLKCLVW VDPCSMMAYR NFGDVVVFDT TYRTNRYAMP FVLFTGVNHH  180
YQSILFGFAL VRDELKTTFE WVLSTWLEAM EDKEPLAIII DQDQAMTVAI ESQLPNTSHL  240
LCSWHISNKF PEKLATYYSK EGFKFDFNNC IYHSLTEVVF EDRWKALILK YNLEGNTWLQ  300
GLYALKHKWV EAYTRNTFSA GQKTTSRSEG MNAYFDAYVG SCTGLKDFVE GAQKALERQF  360
MREKDEDYNT YHRSRCMQMK TALEHHAASI YTKEMFRRFQ EQLVEANKYF VAKDRDRSLE  420
DVEDTFYKCY RPLTGASQRT TYLVSFNKAS LWGSCICR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017217181.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A164TK40	0.0	A0A164TK40_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-96	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	DCAR_031927