PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_032121
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 105aa    MW: 11859.4 Da    PI: 8.2232
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_032121genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY612.2e-1913512159
                 -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                  r+YYrCt+++Cpvkk+vers edp++v++tYeg+Hnh+
  DCAR_032121 13 CRGYYRCTTQKCPVKKHVERSFEDPSIVITTYEGSHNHH 51
                 69************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.4E-10152IPR003657WRKY domain
SuperFamilySSF1182902.48E-151253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-171353IPR003657WRKY domain
PfamPF031061.9E-131351IPR003657WRKY domain
PROSITE profilePS5081119.1521453IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MLSKCIYPKF GICRGYYRCT TQKCPVKKHV ERSFEDPSIV ITTYEGSHNH HLPASLRANL  60
SIGSPSFLSP LNYPIHECYE DTNGTTRSND YLQHSLTLGP LQHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-1314543878Probable WRKY transcription factor 4
2lex_A1e-1314543878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830503.11e-22PREDICTED: probable WRKY transcription factor 71
RefseqXP_022142261.11e-22probable WRKY transcription factor 71
RefseqXP_027088028.11e-22WRKY transcription factor 28-like
RefseqXP_027185582.11e-22WRKY transcription factor 28-like
TrEMBLA0A175YA787e-72A0A175YA78_DAUCS; Uncharacterized protein
STRINGMigut.H01387.1.p5e-22(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-20WRKY DNA-binding protein 71