PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_032185

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 279aa MW: 30212.6 Da PI: 7.2483

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_032185	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	101	123	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H DCAR_032185 101 YQCKTCDRSFPSFQALGGHRASH 123 9***********99999998887 PP
2	zf-C2H2	13.5	0.00022	188	210	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H DCAR_032185 188 HECSICGAEFTSGQALGGHMRRH 210 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.87E-9	100	123	No hit	No description
PROSITE profile	PS50157	11.759	101	128	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.032	101	123	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	6.0E-12	101	125	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	103	123	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.87E-9	183	210	No hit	No description
Pfam	PF13912	5.4E-13	187	212	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	188	210	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.723	188	210	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	190	210	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MGSEEYYNMM MIKGKRSKRQ RQLLAASSSA LALTMAASSS STSSSDQQFN NNICVMNCDD 60 DKNTTQVEQD TANCLILLAQ GGQSPQNLPT TTTAVKDSSM YQCKTCDRSF PSFQALGGHR 120 ASHKRPKPGS TTDPALINHH ESSSSMFNHD TNNTYTTNTT LSLQISPSRP DSCSVKISNT 180 TKSSSKVHEC SICGAEFTSG QALGGHMRRH RSSLLPRASP NHESDNEPKK PAAANVFSLD 240 LNLPAPEDMD QPIESKFPFA MNEQVIVFSP SALVDCHL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017228738.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A175YAH4	0.0	A0A175YAH4_DAUCS; Uncharacterized protein
STRING	XP_010098815.1	1e-60	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	4e-47	C2H2 family protein

Link Out ? help Back to Top
Phytozome	DCAR_032185