PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_032196

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Protein Properties

Length: 291aa MW: 33062.7 Da PI: 8.6264

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_032196	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.7	5.6e-15	184	267	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffkvl +k + l +p +++++++++k++ ++l++ ++Wev++ +++ v+++GW++Fvk+++L+egDf+vF+ g++ f +v +f DCAR_032196 184 FFKVL--IGEFKDS-LNVPATYMQQYNSIKNG--AMRLRN-GENEWEVEV--DGR----VIKSGWNKFVKDHKLCEGDFLVFTALGEMFF--NVAIFG 267 66666..5555555.99*******999777..588877.779**..555....79********************9998888..887775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.9E-19	178	270	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.321	181	269	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.88E-16	182	269	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.79E-11	183	266	No hit	No description
SMART	SM01019	1.4E-12	184	269	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.9E-11	184	266	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MESQYDLGMI GWLVCTVILG GLATVYGFLK KANKNYWSSS SSCFSLGEIV WTIRSVFKNL 60 THVVDSCSCC SHGVNSDCVD FQFSSWEERI ISAKKRERKV GYFLKNIGSN KYTLAVIGKQ 120 SIVGHMSYDV YGSFARNHAS HLPPRQDLKW NTKREVVDWL STLITVPNTE VVQQVQYAKE 180 GNSFFKVLIG EFKDSLNVPA TYMQQYNSIK NGAMRLRNGE NEWEVEVDGR VIKSGWNKFV 240 KDHKLCEGDF LVFTALGEMF FNVAIFGQNG RIKEYPWFHA FNPDGRVVYA *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017228744.1	0.0	PREDICTED: uncharacterized protein LOC108192420
TrEMBL	A0A175YAS9	0.0	A0A175YAS9_DAUCS; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31650.1	2e-12	B3 family protein

Link Out ? help Back to Top
Phytozome	DCAR_032196