PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_032241
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 319aa    MW: 35423.8 Da    PI: 9.5204
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_032241genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.91.6e-19175208134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  DCAR_032241 175 CSDCNTTKTPLWRSGPQGPKSLCNACGIRQRKAR 208
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.5E-21169221IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.099169223IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.85E-13170211No hitNo description
Gene3DG3DSA:3.30.50.107.3E-16173208IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.01E-11174202No hitNo description
PROSITE patternPS003440175200IPR000679Zinc finger, GATA-type
PfamPF003203.4E-17175208IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MTSTYQNYSA HYSPNLQERV LFGSPDRSPV LSTRDFFSSI TDHGQDYCGS FYQDKVNDDF  60
GSNGGSCEHV ENERSNNGLK FSIWKKEDDH EKSNSTTKFQ VKWISSEMRL MQKMKNTDPT  120
NDENLPRIST TTTTSLKLED QKQPCSDPME TDNTSNMTTS SNNMISNMNH PIRVCSDCNT  180
TKTPLWRSGP QGPKSLCNAC GIRQRKARRA MAAAAAANGT STRAETKPPV LIKKSKTLQK  240
DKTKKSSILK SASSSVVSKF KKQGKMAATS SHQDKNKLCL EDFLLSLSKN LAFYNVFPQD  300
EKEAAILLMA LSFGHAHG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017228808.10.0PREDICTED: GATA transcription factor 21-like
TrEMBLA0A175YAF30.0A0A175YAF3_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.13e-18cytokinin-responsive gata factor 1