PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_032280

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

GeBP

Protein Properties

Length: 563aa MW: 62139.4 Da PI: 8.9847

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_032280	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	73.7	3.4e-23	25	108	4	95
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 ++wseeD+++l+qG+id+++++ +sp+dd+ +f +fvk +++f+v+++ql++K+ +L++Kf + + + +sk+h k fel+k i DCAR_032280 25 MSVWSEEDDVSLMQGMIDYEEQKQASPYDDLGKFLDFVKPRLHFDVQRKQLTDKLWKLRNKFVNSSYN--------LSKAHHAKLFELAKLI 108 579************************************************************99999........9999999999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.5E-18	26	108	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
MSESRSRGKV GSSNEQGSMK KNACMSVWSE EDDVSLMQGM IDYEEQKQAS PYDDLGKFLD 60 FVKPRLHFDV QRKQLTDKLW KLRNKFVNSS YNLSKAHHAK LFELAKLIQS WGHGENVGLD 120 CGKGENVGSG DDGNGGKEKK SKVGRNKQRG ELVVDGGLNG EKGNVGVDGD VCVNKVKKKK 180 FVNEDGQIVK ENEGVSGVVK SGKKSKVGRK KQNEELVADD GQIGEKDNVG MDDDGHVNMG 240 MEVVKQKRKF ANEDGQIVKD NEGISGVVKS GKKSKVGRKK QNEELVANDG QIGEKDNVGM 300 DDDVHVNMGM EVVKQKKKFV NEDGQIVEEN EGISGVVKSG KKSKVGRKKQ NEELVADDGQ 360 IGEKDNMGIN DVVHVNMGME VVKQKKKFVN EDGQIVKETE GSPGVVKSGK KSKVDRKKQK 420 EELVANDGQI GEKDNVGMDD DVHVNTGMKV FKQKRKFVNG DGQEIDGISG VVKGRKSSKD 480 LEELTCMYPQ LIKGLKLETL SRMPQNLKDN CVVDTINFMG KEKANELEEK WTDLRVMELG 540 LQAKKLDLAK THINLIFEAA RR*

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

MSESRSRGKV GSSNEQGSMK KNACMSVWSE EDDVSLMQGM IDYEEQKQAS PYDDLGKFLD  60
FVKPRLHFDV QRKQLTDKLW KLRNKFVNSS YNLSKAHHAK LFELAKLIQS WGHGENVGLD  120
CGKGENVGSG DDGNGGKEKK SKVGRNKQRG ELVVDGGLNG EKGNVGVDGD VCVNKVKKKK  180
FVNEDGQIVK ENEGVSGVVK SGKKSKVGRK KQNEELVADD GQIGEKDNVG MDDDGHVNMG  240
MEVVKQKRKF ANEDGQIVKD NEGISGVVKS GKKSKVGRKK QNEELVANDG QIGEKDNVGM  300
DDDVHVNMGM EVVKQKKKFV NEDGQIVEEN EGISGVVKSG KKSKVGRKKQ NEELVADDGQ  360
IGEKDNMGIN DVVHVNMGME VVKQKKKFVN EDGQIVKETE GSPGVVKSGK KSKVDRKKQK  420
EELVANDGQI GEKDNVGMDD DVHVNTGMKV FKQKRKFVNG DGQEIDGISG VVKGRKSSKD  480
LEELTCMYPQ LIKGLKLETL SRMPQNLKDN CVVDTINFMG KEKANELEEK WTDLRVMELG  540
LQAKKLDLAK THINLIFEAA RR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017245307.1	0.0	PREDICTED: uncharacterized protein LOC108216957
TrEMBL	A0A175YB53	0.0	A0A175YB53_DAUCS; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	9e-17	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	DCAR_032280