PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca10360.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 215aa    MW: 23067.1 Da    PI: 7.2126
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca10360.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-193079255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +++GVr ++ +gr++AeIrdp++   ++r++lg+f+ta +Aa+a++ a+++l+g
  Dca10360.1 30 KFRGVRKRP-WGRFAAEIRDPVK---KTRVWLGTFDTAVDAARAYDIAALNLRG 79
                79*******.**********654...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-363093IPR001471AP2/ERF domain
PROSITE profilePS5103222.5763087IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-303086IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-213086IPR016177DNA-binding domain
PfamPF008471.3E-113079IPR001471AP2/ERF domain
CDDcd000182.43E-313086No hitNo description
PRINTSPR003675.6E-103142IPR001471AP2/ERF domain
PRINTSPR003675.6E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MRRIRSTTAT TAAGAGAAPN TAADPPSDFK FRGVRKRPWG RFAAEIRDPV KKTRVWLGTF  60
DTAVDAARAY DIAALNLRGP KAKTNFLSPL LPSAAGDHRR RTPEMEATVV EIMIQRPATS  120
GMSSTVESYS GPKPVHVRSS CEKTKLPPLD CRSDCDSSSS VIDCEDFADI ASAMATATSS  180
GGSVTKCPLP FDLNLPPVDF LEYDDDDLPS TALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-193186662ATERF1
3gcc_A1e-193186662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849043.15e-52ethylene-responsive transcription factor 3
TrEMBLA0A0V0HV085e-52A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-24ethylene responsive element binding factor 3