PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca10688.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 258aa MW: 29173.6 Da PI: 4.8933

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca10688.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1.1e-16	14	66	1	48
TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++q+G+g t ++Ia++++ Rt++++k++w+++l Dca10688.1 14 KGPWTPEEDIILVSYIQQHGPGnwrsvpTNTAIASYLP-QRTDNDIKNYWNTHL 66 79******************5555555556788888.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-24	5	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.65E-16	9	73	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.311	9	70	IPR017930	Myb domain
SMART	SM00717	2.5E-13	13	68	IPR001005	SANT/Myb domain
Pfam	PF00249	9.8E-15	14	66	IPR001005	SANT/Myb domain
CDD	cd00167	6.17E-14	16	66	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MGRPPCCEKD GIKKGPWTPE EDIILVSYIQ QHGPGNWRSV PTNTAIASYL PQRTDNDIKN 60 YWNTHLKKKL KRFQPTTLNH QDVQNTTTTS SSNNEFLTHH HNHHTQQPSP LSSSYASSTE 120 NISRLLENWM KSSSSITTTT TSNPIAVNHV DKNDNAIHHG HDEDDFDEAT LSSSHHFECN 180 DHNIAPTTTM TNPTTCVSME DNNDEGKNVN GSVDNIDEEE DDENNPPLSS FLEKWFLDET 240 TNSRHVSDML ELPSFFSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010677865.1	2e-71	PREDICTED: myb-related protein 306 isoform X2
Swissprot	B3VTV7	2e-52	MYB60_VITVI; Transcription factor MYB60
TrEMBL	A0A0J8CGV4	4e-70	A0A0J8CGV4_BETVU; Uncharacterized protein
STRING	XP_010677864.1	8e-71	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	9e-42	myb domain protein 60

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]