PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca11075.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 298aa    MW: 34655.5 Da    PI: 9.493
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca11075.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1271.5e-0859153590
        FAR1   5 eYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgk...wevtkle..leHnHela 90 
                 + A++ GF ++k+++ ++ +r+ e   + f+Cs++g+++   +  ek +++ ++++++C+ +++  +++    +++   w++ + e    HnH+l+
  Dca11075.1  59 KIARDNGFVLVKATNGSKnRRQPELLASYFRCSRYGRSKGVYDP-EKPKKKPKTQKCDCRFRIRAVENYhfvdNKRvvlWNIVTSEtfGSHNHALT 153
                 569999***99887754439999**************9998888.777888888888888888755544455322233377766656679***996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-559153IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDIEIHCLRR LRSLLWTNVQ VKVPSMDERP GGDNVDYNHL FVTEVCFEDR DKAFDWANKI  60
ARDNGFVLVK ATNGSKNRRQ PELLASYFRC SRYGRSKGVY DPEKPKKKPK TQKCDCRFRI  120
RAVENYHFVD NKRVVLWNIV TSETFGSHNH ALTKYKDGHR HYAGLDEDEK VFVRQEYSSS  180
VLPRDIKTDL HQKSHDKPQP SSKQIYNVTS KIRRELKGDR NPAQQMLTLV VEANYVHWHE  240
TNPLTLELTH VFMSHPEAVK LFRAYPHVVL MDSTYKTNIY KMTLVEVVGV TPVGCCGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110PKKKPKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-