PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca11113.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

BES1

Protein Properties

Length: 601aa MW: 68255 Da PI: 5.5912

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca11113.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	127.2	2e-39	72	146	1	75
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskp 75 gg++r ++ +E+E++k+RER+RRai+aki++GLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ s+ Dca11113.1 72 GGAKRPRPLEEKERTKLRERHRRAITAKILTGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQV 146 57899999*************************************************************966654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.0E-35	74	147	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.47E-168	159	596	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	4.6E-185	161	599	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.4E-97	167	584	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.4E-63	198	212	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.4E-63	219	237	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.4E-63	241	262	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.4E-63	334	356	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.4E-63	407	426	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.4E-63	441	457	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.4E-63	458	469	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.4E-63	476	499	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.4E-63	516	538	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence Send to blast
MATDMQKLIG TSEDDDDEEM DMETKGEYDD EEGKNISASI MANMDGRIGT ISGNDQFHYH 60 SEYQEQSCSQ GGGAKRPRPL EEKERTKLRE RHRRAITAKI LTGLRRHGNY NLRVRADIND 120 VIAALAREAG WVVLPDGTTF PSRSQVVDPP SRLVEHDVSG TPYIPVYMML PLGVINIKCE 180 LSDPDGLLKQ LRTLKLANVD GVMVDCWWGV VEAHAPQEYN WNGYKRLFQI VRDLELKLQV 240 VMSFHECGSN FLDDVCIPLP HWVVEIGHSN PDIFFTDKEG RRNPECLSWG IDKERVLRGR 300 TAIEVYFDFM RSFRIEFDQF FEDGIFSMVE VGLGPSGDLR YPSHPVKHGW RYPGIGEFQC 360 YDQYLMKSLR KAADARGHSF WGKPPTNAGF YNSRPNETAF FCDGGDYDGY FGRFFLNWYS 420 RVLVDHADQI LSLAKLAFEG TCIAVKLSGI HWWYKTASHA AELTAGFYNP CNRNGYAALM 480 SMLKKHGAVL AFTNSEVGIS GELGDYSEAL SDPGGVAWQV FNAAWDESLP VASANSLPCH 540 DREVYNKILE NAKSNNDPDK RHLLSFGYQR LSPQLMERHN MVEFEMFIKK MHGEAVRDEL 600 N

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence Send to blast

MATDMQKLIG TSEDDDDEEM DMETKGEYDD EEGKNISASI MANMDGRIGT ISGNDQFHYH  60
SEYQEQSCSQ GGGAKRPRPL EEKERTKLRE RHRRAITAKI LTGLRRHGNY NLRVRADIND  120
VIAALAREAG WVVLPDGTTF PSRSQVVDPP SRLVEHDVSG TPYIPVYMML PLGVINIKCE  180
LSDPDGLLKQ LRTLKLANVD GVMVDCWWGV VEAHAPQEYN WNGYKRLFQI VRDLELKLQV  240
VMSFHECGSN FLDDVCIPLP HWVVEIGHSN PDIFFTDKEG RRNPECLSWG IDKERVLRGR  300
TAIEVYFDFM RSFRIEFDQF FEDGIFSMVE VGLGPSGDLR YPSHPVKHGW RYPGIGEFQC  360
YDQYLMKSLR KAADARGHSF WGKPPTNAGF YNSRPNETAF FCDGGDYDGY FGRFFLNWYS  420
RVLVDHADQI LSLAKLAFEG TCIAVKLSGI HWWYKTASHA AELTAGFYNP CNRNGYAALM  480
SMLKKHGAVL AFTNSEVGIS GELGDYSEAL SDPGGVAWQV FNAAWDESLP VASANSLPCH  540
DREVYNKILE NAKSNNDPDK RHLLSFGYQR LSPQLMERHN MVEFEMFIKK MHGEAVRDEL  600
N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1q6g_A	1e-145	163	594	11	444	beta-amylase
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	78	KRPRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021767067.1	0.0	beta-amylase 7-like isoform X2
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A3Q0HTZ8	0.0	A0A3Q0HTZ8_PHODC; Beta-amylase
STRING	XP_010670436.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]