PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca11187.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 287aa    MW: 32307.1 Da    PI: 5.117
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca11187.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.71.5e-06171214755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + r RR++i ++ +eL +l+P       +Kl+ a + e A +Y+k Lq
  Dca11187.1 171 RAARERRRKITEKTQELGKLVPGG-----TKLNTAHMFEAASKYVKFLQ 214
                 56799*****************87.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.744164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-4167213No hitNo description
SuperFamilySSF474591.7E-9167224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-9168220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-8170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-4171214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSLLDYSTTN LIDYSYSLPT TQINPNNYYF DYNCNYDNEF PSEAELLCFD PLPPSLFDFD  60
FNFDFDVPVF NPPPPLEYPP VVPTQYSHPS HYYHGDSNSN GFSDMCPDDY SSNKKQKLIP  120
CDDNNNNNYY YYSSPSPCCQ SYTHFCHGGV DNGGGGCGGG GGGKEVTAQS RAARERRRKI  180
TEKTQELGKL VPGGTKLNTA HMFEAASKYV KFLQAQLALL NLINSLPQES DKEANSKNLS  240
ILGSQLIQEK LYTKGKCLLP MDYIPILKEH HLDPSISKHI DELLMMH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855908.12e-58transcription factor bHLH52-like
TrEMBLA0A0K9Q8H86e-57A0A0K9Q8H8_SPIOL; Uncharacterized protein
STRINGXP_010677072.13e-43(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.13e-23bHLH family protein