PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca11454.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bZIP

Protein Properties

Length: 399aa MW: 42746.8 Da PI: 6.5205

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca11454.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.3	5.3e-16	275	316	5	46
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +r++r++kNRe+A rsR+RK+a++ eLe+kv +Le+eN++L+ Dca11454.1 275 RRQKRMIKNRESAARSRARKQAYTHELENKVSQLEEENERLR 316 79***************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.1E-15	269	317	No hit	No description
SMART	SM00338	8.0E-14	271	340	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.576	273	317	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-13	275	317	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.81E-11	275	317	No hit	No description
CDD	cd14707	3.86E-24	275	317	No hit	No description
PROSITE pattern	PS00036	0	278	293	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MGTQTMGSQA GVGDTSVPKP PGLSRQGSLY SLTFDEVQNQ LGNLGKSLGS LNLDELLRTV 60 EATQTMVNGG DAGNGAQNSG QGGCRGQGLH TQSSIALSRD LKEKTVEEVW REIQQQGCKS 120 SLQERDPERQ NTLGEMTLED FLVQAGVEID AATGGGGGGG GGGGGGVSDS NAGQSNLSGG 180 GVDPNGGRLT NVAQHGQWMP YQMIPHQQQH GMMTMFMPGH AVPQRISVTS GALSETGYSD 240 AQLAVSASPI MGTLSDTQTV GRKRIVPGVE KTVERRQKRM IKNRESAARS RARKQAYTHE 300 LENKVSQLEE ENERLRRMMV GRTGEGVTKH SPSTAQVPTS SDELSTYLKT VPVQLMACRL 360 QPEGVDYNFR HLSDSFFPLT LTISVVDVDW FVVVTRSLL

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MGTQTMGSQA GVGDTSVPKP PGLSRQGSLY SLTFDEVQNQ LGNLGKSLGS LNLDELLRTV  60
EATQTMVNGG DAGNGAQNSG QGGCRGQGLH TQSSIALSRD LKEKTVEEVW REIQQQGCKS  120
SLQERDPERQ NTLGEMTLED FLVQAGVEID AATGGGGGGG GGGGGGVSDS NAGQSNLSGG  180
GVDPNGGRLT NVAQHGQWMP YQMIPHQQQH GMMTMFMPGH AVPQRISVTS GALSETGYSD  240
AQLAVSASPI MGTLSDTQTV GRKRIVPGVE KTVERRQKRM IKNRESAARS RARKQAYTHE  300
LENKVSQLEE ENERLRRMMV GRTGEGVTKH SPSTAQVPTS SDELSTYLKT VPVQLMACRL  360
QPEGVDYNFR HLSDSFFPLT LTISVVDVDW FVVVTRSLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673247.1	1e-142	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_019103829.1	1e-142	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0K9R5G7	1e-129	A0A0K9R5G7_SPIOL; Uncharacterized protein
STRING	XP_010673247.1	1e-141	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	8e-51	ABA-responsive element binding protein 3