PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca11474.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bZIP
Protein Properties Length: 457aa    MW: 51024.2 Da    PI: 6.8864
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca11474.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.31.9e-09169198433
                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                  k  rr+++NReAAr+sR RKka++++Le+
  Dca11474.1 169 QKTLRRLAQNREAARKSRMRKKAYVQQLEN 198
                 5888************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.8E-7162213No hitNo description
SMARTSM003386.7E-5166219IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.232168212IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-6170210No hitNo description
PfamPF001702.0E-6170198IPR004827Basic-leucine zipper domain
PROSITE patternPS000360173188IPR004827Basic-leucine zipper domain
PfamPF141441.2E-28254328IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MHNFRDMYCH SSPYFLRGDD ITTKTRNNNN SNSNIGEFEN SVVFHQQEAV DLSTSSLYGL  60
KSGNVTFSSS LPFATVNPGN YVGGEVVVDA GELLVEKRAA AVRNRRLDRW GEETTTAAAA  120
AAAAMADAGQ HTDTSTDVDT DDRNRYRIIQ NGADVVDSTD QSKGKNDDQK TLRRLAQNRE  180
AARKSRMRKK AYVQQLENSR LRLAHMEREL EKARQQGFIV SGSATDAAHS LGSNGSVAFD  240
TQYGRWLDEH QRLINDTRSA LDSHMADDEL RSLVDGVMCH YDDLYRLKNM GAKTDIFHML  300
SGMWKTPAER CFMWLGGYRS SEILKIVVSH LEPLTEQQLM GICNLQQSSQ QAEDALSQGM  360
EALQQSLVET LSATCLGPGS TGMVADYMGQ MAIAMGKLGT LENFVHQADL LRQQTLQQMH  420
RILTTRQAAR ALLVIHDYTT RLRALSSLWL ARPRNFS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667846.10.0PREDICTED: transcription factor TGA2 isoform X1
SwissprotQ415581e-159HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0J8B2050.0A0A0J8B205_BETVU; Uncharacterized protein
STRINGXP_010667846.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-138bZIP family protein