PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca11514.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 523aa MW: 59991.6 Da PI: 10.0628

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca11514.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.6	3.6e-17	185	280	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA +GF+ r +s+++ r + +++ +vC+++g+re+ +k ++ +rr+ + tr+gCka+++ + d + v ++++ HnH l+ Dca11514.1 185 SFYRAYAFACGFTPRLYTSRHR-RGRVLKNKILVCNRQGFRENPQKLrdpscvesKKVRRRKVKITRVGCKACINFCLV-DRAFTVVEFHESHNHRLF 280 5**************99987.7888999*********99999*987888889999*********9.999***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-13	185	280	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.7E-32	402	494	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence Send to blast
MSSDGGFHRQ RSADIVRWLV RFEVETMIDS QPQNDDTISG SKSGQSVPLT PTKQLVSSIP 60 GQYPLVLSHT PGGSEEWVRR VEHQFMPSVG KVFPSLDEAV SFYRAYAFAC GFTPRLYTSR 120 LRKGSKSGQS VPLTPTKQSV SSIPGQYPLV LSHTPGGSEV WVRRVERQFM PSVGKVFPSL 180 DEDVSFYRAY AFACGFTPRL YTSRHRRGRV LKNKILVCNR QGFRENPQKL RDPSCVESKK 240 VRRRKVKITR VGCKACINFC LVDRAFTVVE FHESHNHRLF SANERDFEKV SRNLTLFHKQ 300 LIVDHLKLNI GASKSFRICK KYVNGYSNVG ASLLDFKNFQ RDIKCFIGEK DAQLFIDRFQ 360 MMSESKRGFF FSYHVDDSTS LSRVFWSDAE AIRNYSLFGD AISFDPTYGT NKYSMVFTPF 420 TGVDHHKKSV FFGACLLSNE DENSFRWCFE KLLEAMGQKE PQIIITDQDP AIKKVVQSVF 480 VKARHRFCIW HIMEKLNDKV GSSIRRDYPK LSTNSSLYLV QRC

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence Send to blast

MSSDGGFHRQ RSADIVRWLV RFEVETMIDS QPQNDDTISG SKSGQSVPLT PTKQLVSSIP  60
GQYPLVLSHT PGGSEEWVRR VEHQFMPSVG KVFPSLDEAV SFYRAYAFAC GFTPRLYTSR  120
LRKGSKSGQS VPLTPTKQSV SSIPGQYPLV LSHTPGGSEV WVRRVERQFM PSVGKVFPSL  180
DEDVSFYRAY AFACGFTPRL YTSRHRRGRV LKNKILVCNR QGFRENPQKL RDPSCVESKK  240
VRRRKVKITR VGCKACINFC LVDRAFTVVE FHESHNHRLF SANERDFEKV SRNLTLFHKQ  300
LIVDHLKLNI GASKSFRICK KYVNGYSNVG ASLLDFKNFQ RDIKCFIGEK DAQLFIDRFQ  360
MMSESKRGFF FSYHVDDSTS LSRVFWSDAE AIRNYSLFGD AISFDPTYGT NKYSMVFTPF  420
TGVDHHKKSV FFGACLLSNE DENSFRWCFE KLLEAMGQKE PQIIITDQDP AIKKVVQSVF  480
VKARHRFCIW HIMEKLNDKV GSSIRRDYPK LSTNSSLYLV QRC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	244	KKVRRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-47	FAR1-related sequence 5