PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca11616.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C2H2

Protein Properties

Length: 292aa MW: 31604.1 Da PI: 5.0784

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca11616.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	267	289	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+k+F++ L++H + H Dca11616.1 267 SCGSCKKTFKSDVALQSHSKAkH 289 6*****************88777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.556	266	292	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	268	289	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009294	Biological Process	DNA mediated transformation
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0010162	Biological Process	seed dormancy process
GO:0005730	Cellular Component	nucleolus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MVVVSMKVAT FWFWKVSYKH FSCVEVKGKE PCKVTIDQGS IIHLSQATLG EVKKDKETVI 60 VHVKVGDKKL VLGMLSQENP HLSFDLVFDE EFEITHSWKN GTVHLLGYQT DVHDQGVEFT 120 DSEDEEEEVP VAKENGQVPV AAGKALAAKP KADAKPKTDD SDEDDSAEDD GSSADEDDTD 180 EEMGSDSDDE EESEDEKPAP VANSGKKRPT PDVKTPPQPK KAKIATPTPQ KTDGKKGGVV 240 HPSTPHPSKK GAKTPEKSPK SGGSEVSCGS CKKTFKSDVA LQSHSKAKHG DK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010690019.1	5e-62	PREDICTED: histone deacetylase HDT1
STRING	XP_010690019.1	2e-61	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	2e-26	histone deacetylase 3