PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca11741.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 469aa MW: 54166.4 Da PI: 4.656

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca11741.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.3	5.9e-14	116	200	4	91
FAR1 4 neYAkevGFsvrkskskkskrngei.tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++YAk++GFsvr+++ k +++++ + +vC k g++ +++++ + ++r+++ +gC+ k++ k+ +g+w+ tk+ l+HnH+l+p Dca11741.1 116 SNYAKSCGFSVRVRNVKPVRKTEQPpKYIMWVCHKGGTQVRRSEN---KIKPRPSQMIGCNVKFNAKEL-EGRWVFTKVCLDHNHPLNP 200 68***********9999776665155689****999888...99***********9999.**************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-11	116	200	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MLGMDPLNDE RVHDVYDENF EEEIIRAEKS DEDVTFENID LIDDEEVIQE NVIIMSEDST 60 RESDKDDLPS SEEEEEDDDQ EKEVDDMTDA ATIENLEVPK NGMSFNTLEI LEEHLSNYAK 120 SCGFSVRVRN VKPVRKTEQP PKYIMWVCHK GGTQVRRSEN KIKPRPSQMI GCNVKFNAKE 180 LEGRWVFTKV CLDHNHPLNP EDVRYMRAYR KLPKEVENRV VINDEAGIKP SKSYLAEAVK 240 NHGFQNLSYL ERDVLGSTHD ELEQKKQGGI EKEARIASLE SKWATQCQKG RQQYFSQMGQ 300 SSHRGMENVG TVENEEPSTN EDNDLCNTPS KQPKESTLPQ IFRTGLLDHV VQSITDWVNV 360 LGDGNCGYRA IALEIYGTEN EWSKVRTDLL EEMENYRPYY DDIFGTTIVE QMCLRVAHTR 420 GPGPQSKWYD TSLGLVVANR YVLERKEFHF VTHYANLLHG KKRRPYLEV

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MLGMDPLNDE RVHDVYDENF EEEIIRAEKS DEDVTFENID LIDDEEVIQE NVIIMSEDST  60
RESDKDDLPS SEEEEEDDDQ EKEVDDMTDA ATIENLEVPK NGMSFNTLEI LEEHLSNYAK  120
SCGFSVRVRN VKPVRKTEQP PKYIMWVCHK GGTQVRRSEN KIKPRPSQMI GCNVKFNAKE  180
LEGRWVFTKV CLDHNHPLNP EDVRYMRAYR KLPKEVENRV VINDEAGIKP SKSYLAEAVK  240
NHGFQNLSYL ERDVLGSTHD ELEQKKQGGI EKEARIASLE SKWATQCQKG RQQYFSQMGQ  300
SSHRGMENVG TVENEEPSTN EDNDLCNTPS KQPKESTLPQ IFRTGLLDHV VQSITDWVNV  360
LGDGNCGYRA IALEIYGTEN EWSKVRTDLL EEMENYRPYY DDIFGTTIVE QMCLRVAHTR  420
GPGPQSKWYD TSLGLVVANR YVLERKEFHF VTHYANLLHG KKRRPYLEV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	3e-10	FAR1-related sequence 11