PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca11875.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 327aa    MW: 36376.1 Da    PI: 5.4981
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca11875.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.74.9e-09119164555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h ++Er+RR+ + + f  L  +lP +     kK++K +iL +A++++++L+
  Dca11875.1 119 HIMAERKRRELLAQLFIALSAILPGL-----KKVDKTSILGEAIKHLQQLK 164
                 899***********************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.15E-9107168No hitNo description
PROSITE profilePS5088812.925114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-13117177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-12119178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6119163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-10120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MESLNEELAI ILGEDFPSPI SLESNISSPL AYNIPKVPSN LSISNEPISP IVCDIARKTT  60
TNNNNNNNNN DNNSMHLAHE DPNNVQLLDG SSGKDEGKQQ DGNKGKRKRK REPSQIYDHI  120
MAERKRRELL AQLFIALSAI LPGLKKVDKT SILGEAIKHL QQLKEKVKSL EEAVAKQKVN  180
SMVIVKRSRL VVDNDNDKDE DEDEDDNDKD DSSCTVEDNC TNRDQGRRDG GGSDYPHIEV  240
KVSNKTLLLT LCCENRKGIS AKIFGEVEKH DNIILNSCIA PFGVSAFNIT IVAEVSLFIY  300
LFLILPPFFS LSPIGPLFVR RKVGPWG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108126RKREPSQIYDHIMAERKRR
2122127ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-36bHLH family protein