PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca11931.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 494aa MW: 53382.6 Da PI: 6.5729

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca11931.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.9	5.6e-06	332	368	3	32
HHHHHHHHHHHHHHHHHHHHHHCTSCCC......... CS HLH 3 rahnerErrRRdriNsafeeLrellPkas.......k 32 +h+ +Er RR++i +++ L++l+P +s + Dca11931.1 332 NSHSLAERVRREKISERMKFLQDLVPGCSkflsmklA 368 58************************98645555543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.11E-5	327	370	No hit	No description
SuperFamily	SSF47459	1.27E-7	327	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.299	329	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-7	333	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MDMSDKNNLE LERRGDEQLT YNPPRMSGDW QFNDANFICS SSMGLVSNAN VVMGCGDLAG 60 PSYSSGGMVS SLGSSMWEHP LDSVSIGLND MNVQCGGAIA SEIFPMFKSN MFVQSMAGML 120 PHSLSEFPTD SAFIERAARF SSFSGGHFGE LLHPLGVQSV NTYAPGSEKM VLGPQEVLSG 180 TVVKILPCRQ PQSRDVNVSE TSRDVSLPQD QGAVDGGSPM NKTMPQRSHR EAKQGVSLSG 240 NDSDVPEYSG GGSRENMGPS SVKRLGGSKR KRATQDIESD QAKVVQQQSG ETRKKQSVST 300 AKKSNEKQSS QNSDPPKGEY IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCS 360 KFLSMKLATV HPKLDFNIEQ LLAKDHILSA RSCPSGVGSS PGMPTAYPPL HPSQPPILQP 420 GHPSIGDCPD LLRRTVSSQL TNSGEGYKDP DHQLPNAWED ELHNVVQMGF NATDPLTSED 480 ANCPTAQGSM KAES

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MDMSDKNNLE LERRGDEQLT YNPPRMSGDW QFNDANFICS SSMGLVSNAN VVMGCGDLAG  60
PSYSSGGMVS SLGSSMWEHP LDSVSIGLND MNVQCGGAIA SEIFPMFKSN MFVQSMAGML  120
PHSLSEFPTD SAFIERAARF SSFSGGHFGE LLHPLGVQSV NTYAPGSEKM VLGPQEVLSG  180
TVVKILPCRQ PQSRDVNVSE TSRDVSLPQD QGAVDGGSPM NKTMPQRSHR EAKQGVSLSG  240
NDSDVPEYSG GGSRENMGPS SVKRLGGSKR KRATQDIESD QAKVVQQQSG ETRKKQSVST  300
AKKSNEKQSS QNSDPPKGEY IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCS  360
KFLSMKLATV HPKLDFNIEQ LLAKDHILSA RSCPSGVGSS PGMPTAYPPL HPSQPPILQP  420
GHPSIGDCPD LLRRTVSSQL TNSGEGYKDP DHQLPNAWED ELHNVVQMGF NATDPLTSED  480
ANCPTAQGSM KAES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010681178.1	0.0	PREDICTED: transcription factor bHLH49 isoform X2
TrEMBL	A0A0K9R4Y3	1e-149	A0A0K9R4Y3_SPIOL; Uncharacterized protein
STRING	XP_010681176.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	2e-63	bHLH family protein