PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca12014.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 537aa MW: 62945.3 Da PI: 6.974

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca12014.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.7	1.7e-17	51	144	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ YA +GF++r+ ++kk ++g+ +++ vC++eg+ +++ k+ ++k++r+++ t +gCka++++ + +g+ ++++++ eHnHel+ Dca12014.1 51 SFYRIYALACGFDIRRYSEKKW-DDGTLKTKLIVCNREGSYRQNIKDveeeniADKRSRRTTITPIGCKARIRLFLF-KGVLKIDTFVAEHNHELV 144 59*************98887.8888************99999999998888999999*******999.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-13	51	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.5E-29	266	358	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MQEIEELSGI EGTNDVPNVP VIDEGVFCET VEKDFTPFVG QEFISVNEAH SFYRIYALAC 60 GFDIRRYSEK KWDDGTLKTK LIVCNREGSY RQNIKDVEEE NIADKRSRRT TITPIGCKAR 120 IRLFLFKGVL KIDTFVAEHN HELVTVENRE FQKLSSNLSD YHKFFIVSNM RLNIGASKTY 180 RMMKEYVNGY DNIGASLNHF KNFQRDIKCF IHDRDGQLFV DRFKVMGENK ADFYFDYDLD 240 GDNSLRRAIW VDSIAKRNYE LFGEAVAFDP TYSTNKYSMV FTPFTGVDNH KKSVTFCGAL 300 IAKEDFQSFN WVFSRFLIAM GGKEPEYIIT DQDPGIIKSV KHVFKRSRHR FCIWHIMNKV 360 ADKYGAARSD YKDFLAKLNS IVWNEEIDAV EFDHRWLEIM DCHGVGKDDW FADCFSIRNQ 420 WVLAHCKDLR MGSLMRTTQR SESSNSFFKR FEHKSGTLVE FWMRFESAMD QQRHNKKKLD 480 NYNKHSSPKL ITSLKIEDDG LKLYTHEIFK EFQEEVDLSL SKCSIKGYRE ENGFNEL

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MQEIEELSGI EGTNDVPNVP VIDEGVFCET VEKDFTPFVG QEFISVNEAH SFYRIYALAC  60
GFDIRRYSEK KWDDGTLKTK LIVCNREGSY RQNIKDVEEE NIADKRSRRT TITPIGCKAR  120
IRLFLFKGVL KIDTFVAEHN HELVTVENRE FQKLSSNLSD YHKFFIVSNM RLNIGASKTY  180
RMMKEYVNGY DNIGASLNHF KNFQRDIKCF IHDRDGQLFV DRFKVMGENK ADFYFDYDLD  240
GDNSLRRAIW VDSIAKRNYE LFGEAVAFDP TYSTNKYSMV FTPFTGVDNH KKSVTFCGAL  300
IAKEDFQSFN WVFSRFLIAM GGKEPEYIIT DQDPGIIKSV KHVFKRSRHR FCIWHIMNKV  360
ADKYGAARSD YKDFLAKLNS IVWNEEIDAV EFDHRWLEIM DCHGVGKDDW FADCFSIRNQ  420
WVLAHCKDLR MGSLMRTTQR SESSNSFFKR FEHKSGTLVE FWMRFESAMD QQRHNKKKLD  480
NYNKHSSPKL ITSLKIEDDG LKLYTHEIFK EFQEEVDLSL SKCSIKGYRE ENGFNEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-67	FAR1-related sequence 5