PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca12336.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HB-other
Protein Properties Length: 116aa    MW: 12887.9 Da    PI: 10.1029
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca12336.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.92.6e-0661813555
                HHCTS-HHHHHHHHHHHHHHH CS
    Homeobox 35 kklgLterqVkvWFqNrRake 55
                 k+ ++ +qV +WFqNrR+  
  Dca12336.1 61 GKMVVQMKQVWNWFQNRRYAL 81
                5677899***********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-52487IPR009057Homeodomain-like
SuperFamilySSF466897.7E-92484IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MESNGELLFS FQIIPMLEGY LSGVEVAQME AILKKHEGHV PPRDLLVALA HRFSQSPERA  60
GKMVVQMKQV WNWFQNRRYA LRAKSVEPSG KPGTSPVTAP QAMNVPSVPQ QMAVSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022142790.11e-27protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_022142791.18e-28protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
TrEMBLA0A151R9T12e-27A0A151R9T1_CAJCA; Uncharacterized protein
STRINGXP_009336175.12e-26(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.24e-25sequence-specific DNA binding transcription factors;sequence-specific DNA binding