PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca12425.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ARF
Protein Properties Length: 932aa    MW: 103337 Da    PI: 6.2093
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca12425.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.31.2e-2271172199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l+
  Dca12425.1  71 FCKTLTASDTSTHGGFSVPRRAAEKIftpldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLSAGDSVLFI--RDEKQHLL 166
                 99*****************************9445444.38************************************************..56888889 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++ +r+
  Dca12425.1 167 LGTRRA 172
                 998886 PP
2Auxin_resp113.52e-37197279183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+v++nPras+seFv++++k+ ka + ++vs+GmRf+m+fete+s++rr++Gt++g+sdldp rW+nS+Wr+L+
  Dca12425.1 197 AAHAAANNSPFTVFFNPRASPSEFVIPLAKYYKANYgQQVSLGMRFRMMFETEESATRRYMGTITGISDLDP-RWKNSQWRNLQ 279
                 79********************************999***********************************.*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.15E-4261200IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-3965186IPR015300DNA-binding pseudobarrel domain
CDDcd100176.28E-1970162No hitNo description
SMARTSM010192.2E-2071173IPR003340B3 DNA binding domain
PfamPF023629.6E-2171172IPR003340B3 DNA binding domain
PROSITE profilePS5086311.71671173IPR003340B3 DNA binding domain
PfamPF065071.0E-31197279IPR010525Auxin response factor
PfamPF023094.5E-8819905IPR033389AUX/IAA domain
PROSITE profilePS5174524.901820904IPR000270PB1 domain
SuperFamilySSF542775.89E-7833898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 932 aa     Download sequence    Send to blast
MKMDVNAQVP YYPNLPSKLL CVLHNVTLHA DPETDEVYAQ MTLQPVSSFD KEALLRSDLT  60
LKVHKPQTEF FCKTLTASDT STHGGFSVPR RAAEKIFTPL DFSMQPPAQE LVARDLHDNV  120
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLS AGDSVLFIRD EKQHLLLGTR RANRQPTNLS  180
SSVLSSDSMH IGILAAAAHA AANNSPFTVF FNPRASPSEF VIPLAKYYKA NYGQQVSLGM  240
RFRMMFETEE SATRRYMGTI TGISDLDPRW KNSQWRNLQV GWDESTGGER RTRVSAWEIE  300
PVTGPFFICP LPFLRPKRPW IPGMSDDDTD FDSVFKRTMP RLGDDSHAST GLSLVQWMNM  360
QQNSSLTTNP MQSSFLNTLP ALPPDLSRQL NFSASQPIPQ QSSSLFNPQG PLQSIQRLDQ  420
LQKSSGGSSP LSPLLQSQQM LSDVQSQAFV QNLNSAQHPS SLQNHQFSAN LSHILPQSQH  480
SDTQMQMQLL QRLQHQQPLL SQSNNMNQVH DIPNFSRPLP PSQILDMPQT HIASPPRAQI  540
ISQQTTKSNS QANLQFSQPY QVAKIPSHQS GVIPDIQVQG GLTGDVTADI PSSSASPSAE  600
NCPNVVQTVT NSGVQRGNTI EEKINQSSEN VLNAGCLERM SSQNFTQDLH PKVDVKPSID  660
LAKAQSQGFL TRNTYQSLSS SQIDYLDSSS ATSALVSQND IINHQSNPLP NSHSVFLDDA  720
GYDVHLGTDI SDHLETSLVS DAVLMKSIPD RNYSSNNLSS GCMPSNYDNG KDAQELSSSM  780
VTESFGVPDL TFNNMDSVIS DGSFMNAGAW GAPPQYQRLR TYTKVYKRGA VGRSIDVTRY  840
SDYDELKQDL ARMFGLVGQM EDRGRVGWKL VYVDHESDVL LVGDDPWEDF VNCVRCIKIL  900
SPQEVQQMSL DGDFGNVSLP NQTCSSSDGG NV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-142230089388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021744475.10.0auxin response factor 19-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0K9S0970.0A0A0K9S097_SPIOL; Auxin response factor
STRINGXP_010669598.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-180auxin response factor 19