PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca12557.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bZIP

Protein Properties

Length: 359aa MW: 41356 Da PI: 6.7315

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca12557.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.6	4.9e-12	77	122	4	53
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 +k++rr+++NReAAr+sR+RKka++++Le +L + +ele+l+ Dca12557.1 77 DKVQRRLAQNREAARKSRLRKKAYVQQLEMGRTKLMQME----QELERLR 122 79**************************96444432222....2444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.5E-9	74	124	No hit	No description
SMART	SM00338	0.0071	74	127	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.783	76	120	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.2E-9	77	112	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.62E-7	78	119	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.0E-29	163	236	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MNTPSTQFVV SRKMNIYEPL HQISSWVDNF RDDGYINVSP STILEVEDKM DSLSEDTSHG 60 VETFTNRYDH ETSKTIDKVQ RRLAQNREAA RKSRLRKKAY VQQLEMGRTK LMQMEQELER 120 LRQQGVQTSG GIDPLSYSGA VNSGIVAFEM EYGHWVEEQN KQVCELRNAL NSRVTDVELR 180 ILVDAGMKHY FDLFQLKATA AKADVFYLMY GMWKTSAERF FLWIGGFRPS ELLKVLGPQL 240 DPLTDQQVMD VYNLKQSCEQ AEEALTQGME KLQQILAESV AQGLFVEGSY RPQMNSAIEK 300 LENLVSFVNQ ADHLRKETLL QMHRILTIRQ AARGLLALGE YFHRLRALSS LWSSRPRET

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MNTPSTQFVV SRKMNIYEPL HQISSWVDNF RDDGYINVSP STILEVEDKM DSLSEDTSHG  60
VETFTNRYDH ETSKTIDKVQ RRLAQNREAA RKSRLRKKAY VQQLEMGRTK LMQMEQELER  120
LRQQGVQTSG GIDPLSYSGA VNSGIVAFEM EYGHWVEEQN KQVCELRNAL NSRVTDVELR  180
ILVDAGMKHY FDLFQLKATA AKADVFYLMY GMWKTSAERF FLWIGGFRPS ELLKVLGPQL  240
DPLTDQQVMD VYNLKQSCEQ AEEALTQGME KLQQILAESV AQGLFVEGSY RPQMNSAIEK  300
LENLVSFVNQ ADHLRKETLL QMHRILTIRQ AARGLLALGE YFHRLRALSS LWSSRPRET

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00502	DAP	Transfer from AT5G10030	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021846364.1	0.0	transcription factor TGA4-like isoform X1
Refseq	XP_021846365.1	0.0	transcription factor TGA4-like isoform X1
Swissprot	Q39162	1e-178	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A0K9RI73	0.0	A0A0K9RI73_SPIOL; Uncharacterized protein
STRING	XP_010680601.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-163	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]