PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca126.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 325aa    MW: 36052 Da    PI: 8.4899
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca126.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.9e-145296147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT eE++++++a +++  + Wk+I + +g  +t  q++s+ qky
         Dca126.1 52 RESWTDEEHDRFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 96
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-1646101IPR009057Homeodomain-like
PROSITE profilePS5129415.98847101IPR017930Myb domain
TIGRFAMsTIGR015574.2E-185099IPR006447Myb domain, plants
SMARTSM007171.9E-105199IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-65292IPR009057Homeodomain-like
PfamPF002492.6E-115296IPR001005SANT/Myb domain
CDDcd001672.44E-85497No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTQSPEFCGD SAAAPAFGAN ISPVTSGGGG GVAAVEEQCK KVRKPYTITK CRESWTDEEH  60
DRFLEALQLF DRDWKKIEAF VGSKTVIQIR SHAQKYFNFL KFKRLSLMSV FRRLVQRGKL  120
HIPTHKKHLK LVRELLSMIT NQSTGQQQIS SSRAVEPTRV HSQEPSSVLT GQSAPTASWS  180
FGSMPAFDSS NVGRDDAVFP VNSMVNCCSS SSESAGGWPT ARLQSQIDEA ERMKVMPDFC  240
QVYSFIGSVF DPGTSDHFER LMRMDPINVE TVLLLMKNLS SNLLSPEFEE HRKLLASYDV  300
DMGKAGSCSR LPLARTNSQT AIPAM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021748776.11e-112protein REVEILLE 5-like isoform X2
TrEMBLA0A0K9QSI31e-102A0A0K9QSI3_SPIOL; Uncharacterized protein
STRINGXP_010669883.11e-108(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.12e-54MYB_related family protein