PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca12624.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

HB-other

Protein Properties

Length: 1762aa MW: 195709 Da PI: 4.9022

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca12624.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.6e-18	28	82	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++ql++Le+ ++ + yps++ r+eL+++lgLt+rq ++WF+ rR k++k Dca12624.1 28 KRKMKTASQLQVLEKTYQVDTYPSESLRAELSTQLGLTDRQLQMWFCHRRLKDRK 82 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-17	4	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.35E-16	15	82	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.908	23	83	IPR001356	Homeobox domain
SMART	SM00389	3.5E-16	25	87	IPR001356	Homeobox domain
CDD	cd00086	2.23E-14	26	82	No hit	No description
Pfam	PF00046	5.6E-16	28	82	IPR001356	Homeobox domain
Pfam	PF05066	1.4E-13	722	790	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	0.0012	937	981	IPR028942	WHIM1 domain
Pfam	PF15613	7.2E-12	1107	1178	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1762 aa Download sequence Send to blast
MEGGSSDGEK KPPETGGGGS GGGEPKVKRK MKTASQLQVL EKTYQVDTYP SESLRAELST 60 QLGLTDRQLQ MWFCHRRLKD RKAPTGSGKR SKKEEGAPSA SAAMAAPASS GVPALPIAQA 120 APKEEMLGGE FGNEHGSRSG SGSSPYGHGD SRQSYGFRPN VAVPRLSGPG RHYEPPSQSV 180 VELRAIAFVE AQLGEALRDD GPALGMEFDP LPPGAFGAPI CISQKASGRA CEPALFDAKA 240 GKGSGRDLRE YQFLPEQPTV KSESYERLPQ SHYYGSPSDG LGTKTPPLPG GRAMHNYEEV 300 PVAYGLPSQM PSLSLASQQR KLGSTMPSSG DYDNVPHKSP HMGMGMEPSY SMHPPLTGPN 360 NAHLASDRLI SQEDEVVRVE RKRKSDEARI AKEMEAHEKR MRKELEKQDI LRRKREEQMK 420 KEMERQDRER RKEEERLMRE RLREEERYQR EQKREMERRE KYMLQESQRA EKMRQKEELR 480 REREAARQKA ANDRAVARRL AKESMELIED ERLELMEIAA SRKGLPSIIS LDSETLQNLD 540 SFRDMLQVFP PKSVQLKKPF AVKPWLDSEE NVGNLLMDPR ILGEIHVALL RTIIKDIEDV 600 ARTPSTGAGV NQYSVGAPAG GHPYIVEGAY SWGFDIRTWQ RNLSPLTWPE ILRQIALSAG 660 FGPKLKKRNV EQAFPPEENE GDDGNDIISN LRTGAAVENA VAKMRERGYA NPRRSRHRLT 720 PGTVKFAAYY VLSLEGGDGL NILEVADRIQ RSGLRDLTTS KTPEASIAAA LSRDTKLFER 780 TAPSTYCVRS PFRKDPTDAE AILSGAREKI RVFKSGLVDG VEADVDGVEA DDVEKDDDSE 840 SDIAEDPEID DLATDLTPNK AMDRTHDDGD INLFARTAAN KSNGLANAMD DLSSAQSKGF 900 KDLNDNGFFA EETVVSSGIC REGFSTDHDN ADVDESCPGE PWVQGLMEGE YSILCVEERL 960 NALVSLIGVA TEGNSIRVVL EERLEAATAL KKQMWAEAQI DKRRLKEEYL MKTPYVAFAP 1020 NKTESTVASD GRVPMFSLDE NSETVATTQM KPFLNTTDMN LDKSLGSTDF GGSSDNLALQ 1080 QSVYVDRCRA QLKSYIGHKA EEMYVYRSLP LGQDRRRNRY WMFIASASCN DPGAGRIFVE 1140 LYNGGWMLID SVEAFDTLVA SLDVRGVRES HLQALLNKVG PLFKNSARRN KVEWSMDRET 1200 ETSVKTELFE IGSNPETSGA TDSPNSIVCP SNSETPEVSS SFQIECGRNE SEIMNALKRY 1260 NEVESWTWTE CFSSSFLCAT KFGTKRCSQL IGICDSCHEV YFYEDQHCPT CHNTYTDFNH 1320 DLNFSEHVAQ CRELKPNLER NFQLIDSPPP RMRLLKAMLA LVEVCIPSEA FKSIWSDSYR 1380 RSWGMKLHMS SSTEELLQVL TLLEGAIKRD FLSPTFQTTC EMLSSGKNVG YDVNDASSFD 1440 TVTVLPWIPQ TTSAVALRLL ELDSAVAYLP EQKIQYAKDA EAGKLLNLPS KFTVVRNTQD 1500 DDFASPYGGY QQIEAWQDRG TEQLGLASTR GGRGRGRGRT RGGRSQRRVA GSRGEPSSRS 1560 VPSSDKLGPI PGGWKSRSTR GKGGRKRGRR TARSRQKPVK KAPIVSLPEP SSYDKSPPGF 1620 SGRNEWNTEE MRKIQADEND VNDDSISDRS DHNDDNGQAS GDEYDEMGVD NYTSVYNGKP 1680 HLMDGFDYNG EGDEEDEDDR VEVGDDMDED YVEGVDYEQA DMDVGGFLIA DSEDDGDGDV 1740 GERDGDQGDS SDSVSSDYSS SE

Sequence ? help Back to Top

Protein Sequence Length: 1762 aa Download sequence Send to blast

MEGGSSDGEK KPPETGGGGS GGGEPKVKRK MKTASQLQVL EKTYQVDTYP SESLRAELST  60
QLGLTDRQLQ MWFCHRRLKD RKAPTGSGKR SKKEEGAPSA SAAMAAPASS GVPALPIAQA  120
APKEEMLGGE FGNEHGSRSG SGSSPYGHGD SRQSYGFRPN VAVPRLSGPG RHYEPPSQSV  180
VELRAIAFVE AQLGEALRDD GPALGMEFDP LPPGAFGAPI CISQKASGRA CEPALFDAKA  240
GKGSGRDLRE YQFLPEQPTV KSESYERLPQ SHYYGSPSDG LGTKTPPLPG GRAMHNYEEV  300
PVAYGLPSQM PSLSLASQQR KLGSTMPSSG DYDNVPHKSP HMGMGMEPSY SMHPPLTGPN  360
NAHLASDRLI SQEDEVVRVE RKRKSDEARI AKEMEAHEKR MRKELEKQDI LRRKREEQMK  420
KEMERQDRER RKEEERLMRE RLREEERYQR EQKREMERRE KYMLQESQRA EKMRQKEELR  480
REREAARQKA ANDRAVARRL AKESMELIED ERLELMEIAA SRKGLPSIIS LDSETLQNLD  540
SFRDMLQVFP PKSVQLKKPF AVKPWLDSEE NVGNLLMDPR ILGEIHVALL RTIIKDIEDV  600
ARTPSTGAGV NQYSVGAPAG GHPYIVEGAY SWGFDIRTWQ RNLSPLTWPE ILRQIALSAG  660
FGPKLKKRNV EQAFPPEENE GDDGNDIISN LRTGAAVENA VAKMRERGYA NPRRSRHRLT  720
PGTVKFAAYY VLSLEGGDGL NILEVADRIQ RSGLRDLTTS KTPEASIAAA LSRDTKLFER  780
TAPSTYCVRS PFRKDPTDAE AILSGAREKI RVFKSGLVDG VEADVDGVEA DDVEKDDDSE  840
SDIAEDPEID DLATDLTPNK AMDRTHDDGD INLFARTAAN KSNGLANAMD DLSSAQSKGF  900
KDLNDNGFFA EETVVSSGIC REGFSTDHDN ADVDESCPGE PWVQGLMEGE YSILCVEERL  960
NALVSLIGVA TEGNSIRVVL EERLEAATAL KKQMWAEAQI DKRRLKEEYL MKTPYVAFAP  1020
NKTESTVASD GRVPMFSLDE NSETVATTQM KPFLNTTDMN LDKSLGSTDF GGSSDNLALQ  1080
QSVYVDRCRA QLKSYIGHKA EEMYVYRSLP LGQDRRRNRY WMFIASASCN DPGAGRIFVE  1140
LYNGGWMLID SVEAFDTLVA SLDVRGVRES HLQALLNKVG PLFKNSARRN KVEWSMDRET  1200
ETSVKTELFE IGSNPETSGA TDSPNSIVCP SNSETPEVSS SFQIECGRNE SEIMNALKRY  1260
NEVESWTWTE CFSSSFLCAT KFGTKRCSQL IGICDSCHEV YFYEDQHCPT CHNTYTDFNH  1320
DLNFSEHVAQ CRELKPNLER NFQLIDSPPP RMRLLKAMLA LVEVCIPSEA FKSIWSDSYR  1380
RSWGMKLHMS SSTEELLQVL TLLEGAIKRD FLSPTFQTTC EMLSSGKNVG YDVNDASSFD  1440
TVTVLPWIPQ TTSAVALRLL ELDSAVAYLP EQKIQYAKDA EAGKLLNLPS KFTVVRNTQD  1500
DDFASPYGGY QQIEAWQDRG TEQLGLASTR GGRGRGRGRT RGGRSQRRVA GSRGEPSSRS  1560
VPSSDKLGPI PGGWKSRSTR GKGGRKRGRR TARSRQKPVK KAPIVSLPEP SSYDKSPPGF  1620
SGRNEWNTEE MRKIQADEND VNDDSISDRS DHNDDNGQAS GDEYDEMGVD NYTSVYNGKP  1680
HLMDGFDYNG EGDEEDEDDR VEVGDDMDED YVEGVDYEQA DMDVGGFLIA DSEDDGDGDV  1740
GERDGDQGDS SDSVSSDYSS SE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1529	1537	RGGRGRGRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021716121.1	0.0	homeobox-DDT domain protein RLT2-like isoform X2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A0K9RUY6	0.0	A0A0K9RUY6_SPIOL; Uncharacterized protein
STRING	XP_010689786.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator