PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca12933.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 194aa MW: 21774.6 Da PI: 8.6661

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca12933.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.2	7.1e-14	130	175	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR+ri +++ +L+el+P+ +k + a++L +Av+YIksLq Dca12933.1 130 SIAERERRNRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKSLQ 175 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.688	124	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.2E-16	126	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.27E-12	128	177	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-15	129	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.8E-12	130	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-11	130	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MRGIGSFRVG GGTNGESGPR SSRLGMNHLP RIAEIQNENI KETSPDEVKF RTHDSEFDSP 60 TGFASWNDSG SDASLLSQNG SLSRPPMLTH HLSLPKTSTE MATIEKLLQF QDTVPCKVRA 120 KRGFATHPRS IAERERRNRI SERMRKLQEL VPNMDKQTNT ADMLDLAVDY IKSLQDEFKV 180 LSDCRAKCRC VDLP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010672727.2	5e-98	PREDICTED: transcription factor bHLH130
Swissprot	Q66GR3	3e-52	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A0K9QVG3	2e-95	A0A0K9QVG3_SPIOL; Uncharacterized protein
STRING	XP_010672727.1	3e-98	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-41	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]