PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca12978.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ARR-B
Protein Properties Length: 375aa    MW: 41821.6 Da    PI: 7.3022
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca12978.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.43.6e-29211264155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Dca12978.1 211 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 264
                 79*******************.********************************8 PP
2Response_reg75.12.6e-25361441109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ + +l+++l+  +y +v+ +  +e al ll+e++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a ++++ + + +  Ga 
    Dca12978.1  36 VLVVDDDPTCLIILEKMLRTCRY-DVTKTNRAEFALSLLRENKngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKSVVMKGVTHGAC 130
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l +
    Dca12978.1 131 DYLIKPVRIEALKN 144
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.4E-16511374IPR017053Response regulator B-type, plant
SuperFamilySSF521721.99E-3433156IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.0E-4133169No hitNo description
SMARTSM004481.8E-2734146IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.95435150IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.6E-2236144IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.13E-2537149No hitNo description
PROSITE profilePS5129411.048208267IPR017930Myb domain
SuperFamilySSF466891.54E-20208268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-30210269IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-25211264IPR006447Myb domain, plants
PfamPF002494.4E-8213263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNLGGGLMGS MSLPSSTMTR KPVDGGSDPF PAGLRVLVVD DDPTCLIILE KMLRTCRYDV  60
TKTNRAEFAL SLLRENKNGF DIVISDVHMP DMDGFKLLEH VGLEMDLPVI MMSADDSKSV  120
VMKGVTHGAC DYLIKPVRIE ALKNIWQHVV RKKKNEWRDV EQSSSYDEGD RQQKQDDVVS  180
SPANEGSWKS SKRKAEDDDA DEKDDTSTLK KPRVVWSVEL HQQFVAAVNQ LGIDKAVPKK  240
ILELMNVPGL TRENVASHLQ KYRLYLRRLS GVSQHQGGGL NGSFMSQDGG FGAMSQLSGI  300
DLQSLHATAQ LSSQTLAAYT RLPPIKPSMS MPFADQRNLF SFENTATSRY VDGQQQQQQY  360
SKQMNLLHGI RNNFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-22210270464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670914.10.0PREDICTED: two-component response regulator ARR2 isoform X1
RefseqXP_010670915.10.0PREDICTED: two-component response regulator ARR2 isoform X2
SwissprotQ9ZWJ91e-162ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A0K9RPY90.0A0A0K9RPY9_SPIOL; Two-component response regulator
TrEMBLA0A0K9RRQ20.0A0A0K9RRQ2_SPIOL; Two-component response regulator
STRINGXP_010670914.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-155response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]