PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca13203.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

G2-like

Protein Properties

Length: 150aa MW: 16859.5 Da PI: 4.1018

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca13203.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	41	4.1e-13	68	95	2	29
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtP 29 prlrWtp+LH rFv+ave+LGG+e P Dca13203.1 68 PRLRWTPDLHLRFVHAVERLGGQETSKP 95 8**********************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-11	64	94	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MEGSVNQSGE CSKTNLSEQG DDEDESDEND EEMTYNNNNG GSSSNSTVDE NDEKPSTTVR 60 PYVRSKTPRL RWTPDLHLRF VHAVERLGGQ ETSKPIHGLP ITMDYCTIPT KSSYQPILLE 120 QTPMDGLDFD MIIINILDDE SSTFKDLIIK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010092813.1	3e-31	two-component response regulator ORR22
Refseq	XP_020552483.1	2e-32	putative Myb family transcription factor At1g14600
Refseq	XP_022747677.1	3e-32	probable transcription factor KAN4
TrEMBL	A0A2P5B120	3e-32	A0A2P5B120_PARAD; Homeodomain-like
STRING	XP_010092813.1	1e-30	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-20	G2-like family protein