PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca13348.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

BES1

Protein Properties

Length: 275aa MW: 29401.9 Da PI: 9.2646

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca13348.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	185.7	1.9e-57	13	159	2	150
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssas..aspesslqssl 98 +s+r+p+wkErEnn+rRERrRRai+aki++GLR Gny lpk++DnneVlkALc+eAGw+ve+DGttyrkg kp+ + +++ + as +sp+ss++ s+ Dca13348.1 13 TSTRTPSWKERENNRRRERRRRAISAKIFTGLRTFGNYSLPKHCDNNEVLKALCHEAGWIVEPDGTTYRKGRKPPLHVDVVPRPASlpVSPCSSYHPSP 111 689**********************************************************************666666555554599999999555 PP DUF822 99 kssalaspvesysaspksssfpspssldsislasa....asllpvlsvlslvsssl 150 +s +spv+s+ asp +s++ +++ ++ sl+p+l++ls++sss+ Dca13348.1 112 YASFNPSPVSSSLASP--------ASSSYAPTPNNflegGSLIPWLKNLSSASSSA 159 5555555555555555........55555544444444489******9977764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.1E-58	14	153	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MSGDGGGGGG GRTSTRTPSW KERENNRRRE RRRRAISAKI FTGLRTFGNY SLPKHCDNNE 60 VLKALCHEAG WIVEPDGTTY RKGRKPPLHV DVVPRPASLP VSPCSSYHPS PYASFNPSPV 120 SSSLASPASS SYAPTPNNFL EGGSLIPWLK NLSSASSSAS SSKLPHAYAW GSRSISAPVT 180 PPFSSSPGRC QILGVMSAQT LTPLQSGTCS PAVFDQTGDV PMTDQFVLRS GGVEGTVVKA 240 WEGERIHDDC SDELELTLGC SKTRSYSSLL TLSNK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	8e-23	16	86	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	8e-23	16	86	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	8e-23	16	86	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	8e-23	16	86	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010675300.1	6e-80	PREDICTED: BES1/BZR1 homolog protein 4
Swissprot	O49404	5e-56	BEH3_ARATH; BES1/BZR1 homolog protein 3
TrEMBL	A0A151R662	7e-67	A0A151R662_CAJCA; BES1/BZR1 isogeny protein 3
STRING	XP_010675300.1	2e-79	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18890.1	1e-52	BES1/BZR1 homolog 3