PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca13352.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family DBB
Protein Properties Length: 302aa    MW: 32916.3 Da    PI: 5.3306
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca13352.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.81.5e-05443538
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                 C+ +e  +++  C  ++  lC  C ++ H        H+
  Dca13352.1  4 QCSVCETAQATVLCCADEAALCVRCDETVHAAnklaskHQ 43
                7******99*********************6556666665 PP
2zf-B_box25.13.7e-085494337
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                 ++C+ ++e    +fC +++ llC++C +++H+       H
  Dca13352.1 54 LPICDICQEGVGYFFCIEDRALLCRKCDVAIHSAnsfvsaH 94
                589******98*********************665566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.855147IPR000315B-box-type zinc finger
CDDcd000211.39E-6345No hitNo description
SMARTSM003367.3E-8447IPR000315B-box-type zinc finger
SMARTSM003361.3E-125299IPR000315B-box-type zinc finger
PROSITE profilePS501198.8875299IPR000315B-box-type zinc finger
PfamPF006431.2E-55594IPR000315B-box-type zinc finger
CDDcd000215.10E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MKIQCSVCET AQATVLCCAD EAALCVRCDE TVHAANKLAS KHQRFSLSHS SSHLPICDIC  60
QEGVGYFFCI EDRALLCRKC DVAIHSANSF VSAHQRFLLT GVKVGLEAAE PSSSPSKART  120
TQTWDKGSDA DNRSAPTTTR YDRADDTSMP MSVSEYAKIR PVQNGTLEDL TQSRLSFAGG  180
SVAGNLSQWP VDEYLGMSDF NHDYNFTANG SSKADSGKLG SSDSSAFLRS LEVDLDSDDQ  240
LGQVPDVSWV PSPPTTSGVF FPKNSQEWAD NGMFVPDISW SQTPYHDQYQ SNHGAGKRRR  300
SS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675280.11e-135PREDICTED: B-box zinc finger protein 22
TrEMBLA0A0K9R0T51e-130A0A0K9R0T5_SPIOL; Uncharacterized protein
STRINGXP_010675280.11e-135(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-75light-regulated zinc finger protein 1