PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca13478.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bZIP

Protein Properties

Length: 248aa MW: 27753.3 Da PI: 8.9818

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca13478.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.6	4.2e-16	178	227	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r++r++kNRe+A rsR+RK+a++ eLe+k+ Le+eN++L+ + +e +ke Dca13478.1 178 RRQKRMIKNRESAARSRARKQAYTYELENKISLLEEENERLR-TTKEVEKE 227 79****************************************.66666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.1E-14	169	222	No hit	No description
SMART	SM00338	8.6E-13	174	237	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.093	176	220	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.5E-13	177	221	IPR004827	Basic-leucine zipper domain
CDD	cd14707	8.11E-21	178	220	No hit	No description
SuperFamily	SSF57959	1.0E-11	178	224	No hit	No description
PROSITE pattern	PS00036	0	181	196	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MVSQVGVVND TSGTKPLNLS RQGSFYSLTL DEVQNQLGGL SKPLGNLNID ELLRTVEAND 60 SNVGSSPIRQ SSISLSRGLR ERTVEEVWTE IQQRGKGCNL GEMTLDDFLV HAGVVIDAVD 120 PNVGHDGPWR TYELVPQQQH NELMTVLTSP LRGTLSDPQT VGRKRGAPGD VVQKKVERRQ 180 KRMIKNRESA ARSRARKQAY TYELENKISL LEEENERLRT TKEVEKESPI VALPQTKYQL 240 HRTNSAPI

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673247.1	4e-82	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_019103829.1	4e-82	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-70	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0K9R5G7	2e-76	A0A0K9R5G7_SPIOL; Uncharacterized protein
STRING	XP_010673247.1	2e-81	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	8e-59	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]