PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca13518.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26884.7 Da    PI: 10.0562
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca13518.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.31.2e-292171151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++ rqvtf+kRrng+lKKA+ELSvLCda+ a+i+fss+g+lyeys+
  Dca13518.1 21 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAQLALIVFSSRGRLYEYSN 71
                79***********************************************95 PP
2K-box99.16.3e-33891845100
       K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 +++s++e +a+++qqe+akL+ +i+++q+++++l+Ge+L++Ls+ke++q+e++Le++++++RskK+elll+ ie lqk+e +l++en  Lr+k++e
  Dca13518.1  89 NSSSVSEINAQYYQQESAKLRHQIQTMQNSNKNLMGECLDNLSVKEMKQVENRLERGISRVRSKKHELLLADIEFLQKQETKLEHENAFLRSKIAE 184
                 455699***************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.2261373IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-391372IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-3214100IPR002100Transcription factor, MADS-box
CDDcd002652.17E-411488No hitNo description
PRINTSPR004041.8E-311535IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001569IPR002100Transcription factor, MADS-box
PfamPF003191.6E-252269IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-313550IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-315071IPR002100Transcription factor, MADS-box
PfamPF014864.2E-2497182IPR002487Transcription factor, K-box
PROSITE profilePS5129714.84598188IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MLTNTQGEEK KKTGRGKIEI KRIENTTSRQ VTFCKRRNGL LKKAYELSVL CDAQLALIVF  60
SSRGRLYEYS NHNIRSIIER YKKAIDGSNS SSVSEINAQY YQQESAKLRH QIQTMQNSNK  120
NLMGECLDNL SVKEMKQVEN RLERGISRVR SKKHELLLAD IEFLQKQETK LEHENAFLRS  180
KIAEVENLQQ LNSNENLSVL HGFMTRDQMM VPNMLQNSSA TFTIPTDKKF LH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A6e-191496183Myocyte-specific enhancer factor 2A
3kov_B6e-191496183Myocyte-specific enhancer factor 2A
3kov_I6e-191496183Myocyte-specific enhancer factor 2A
3kov_J6e-191496183Myocyte-specific enhancer factor 2A
3p57_A6e-191496183Myocyte-specific enhancer factor 2A
3p57_B6e-191496183Myocyte-specific enhancer factor 2A
3p57_C6e-191496183Myocyte-specific enhancer factor 2A
3p57_D6e-191496183Myocyte-specific enhancer factor 2A
3p57_I6e-191496183Myocyte-specific enhancer factor 2A
3p57_J6e-191496183Myocyte-specific enhancer factor 2A
5f28_A6e-191496284MEF2C
5f28_B6e-191496284MEF2C
5f28_C6e-191496284MEF2C
5f28_D6e-191496284MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683283.11e-114PREDICTED: agamous-like MADS-box protein AGL11
SwissprotF6I4571e-103AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A0B0PQI51e-102A0A0B0PQI5_GOSAR; Uncharacterized protein
TrEMBLA0A0D2TS161e-102A0A0D2TS16_GOSRA; Uncharacterized protein
TrEMBLB6E2S51e-102B6E2S5_GOSBA; Agamous-like protein 1
TrEMBLQ8H6F81e-102Q8H6F8_GOSHI; MADS box protein GHMADS-2
STRINGXP_010683283.11e-113(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.19e-94MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]