PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca13531.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 221aa    MW: 24519.5 Da    PI: 6.234
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca13531.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67e-16125208492
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                  ++ps+v++  +l lp++f+ +h   + +++tltl de+g +    + + k +    l++GW++F+ +++L +gD vvF+l++    +++
  Dca13531.1 125 PMLPSHVSSGFWLGLPRHFCGRHL--PSSDITLTLVDEEGDECPTVYLHHKAG----LSGGWRGFAIDHRLSDGDAVVFQLISPsVLKTY 208
                 689******************995..34789****************555555....9**********************9986333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-20118212IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-16120211IPR015300DNA-binding pseudobarrel domain
CDDcd100175.79E-23120211No hitNo description
SMARTSM010191.4E-15122216IPR003340B3 DNA binding domain
PROSITE profilePS5086310.109122213IPR003340B3 DNA binding domain
PfamPF023627.9E-14126212IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MGLSSYEERR QKRVDENKRR LEDLNLSHLS QSLKNLSPKP SPCINAMIDE ESGVEASNCR  60
ETDGSCQTVS MSRLLSSPRS NYGVGRGSVW NGVYASDEAR ANAVEKAEKL VSKLEHEGFP  120
TVIRPMLPSH VSSGFWLGLP RHFCGRHLPS SDITLTLVDE EGDECPTVYL HHKAGLSGGW  180
RGFAIDHRLS DGDAVVFQLI SPSVLKTYII RVHDQELSSE E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847199.14e-81B3 domain-containing protein At5g42700-like isoform X2
TrEMBLA0A0K9QC357e-79A0A0K9QC35_SPIOL; Uncharacterized protein
STRINGXP_010667517.14e-75(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-56B3 family protein