PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca13532.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Protein Properties

Length: 208aa MW: 23513.9 Da PI: 8.4835

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca13532.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.6	4e-17	107	194	4	96
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 ++ps+v++ +l lp +f+++h + +++t+tl de+g++ + + rk++ l++GW++F+ +++L +gD vvF+l++ +++ ++v Dca13532.1 107 PMLPSHVSSCFWLGLPSHFCRRHL--PSSDTTITLVDEEGNECPMIYLQRKTG----LSGGWRGFAIDHRLSDGDAVVFQLISPsVMKTYIIRV 194 689******************5..346789***********545554....*********************99864444455555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.3E-22	100	194	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.1E-18	102	193	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.44E-24	102	193	No hit	No description
PROSITE profile	PS50863	10.659	104	195	IPR003340	B3 DNA binding domain
SMART	SM01019	3.2E-18	104	198	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-15	108	196	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MGLSSYEECR QKRVDENKKR LEDLNLIHLS QSLKNLSPKP SPMKKVVSKP RTVEKQMVPV 60 RRNYGVGRGC VWNGVYASDE ARANAIEKAE KLVSKLEHEG FPTVIRPMLP SHVSSCFWLG 120 LPSHFCRRHL PSSDTTITLV DEEGNECPMI YLQRKTGLSG GWRGFAIDHR LSDGDAVVFQ 180 LISPSVMKTY IIRVHDQELS SEETFSDA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021729808.1	2e-92	B3 domain-containing protein At5g42700-like
Swissprot	Q9FMZ4	7e-60	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A0K9QC35	7e-89	A0A0K9QC35_SPIOL; Uncharacterized protein
STRING	XP_010667517.1	3e-86	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	3e-55	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]