PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca13544.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 328aa    MW: 37525.2 Da    PI: 8.9919
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca13544.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.7e-171781799
                E--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 17 vlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                ++p+kf e+  gk   + t+tl+ +sg  +W+v+l  +++++  +l++GW eFv+a  L+e+D+++Fk++  s+f   v vf++
  Dca13544.1  1 MIPRKFSENARGK--LHETVTLKGPSGtTTWQVRL--TGCGEDLYLKDGWTEFVNAFSLEENDILIFKYKTGSCF--DVLVFDQ 78
                69****9777767..6679*******999******..********************************988999..8888875 PP
2B3444e-14226313191
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                 f+ v+ p +v+++  l+lp +  ++h  +  ++k+++   ++g++W  k+i++ k+++  l+ GWk+F+ +n+L+e D++vFkl  + ++ e
  Dca13544.1 226 FLVVMRPTHVSRKFFLSLPAEWSTKHL-N--CKKQVIYLGTNGKRWPKKVIFSSKGRG-GLSYGWKQFAMENRLEELDVLVFKLATKtDDHE 313
                 788999*****************9993.4..5567999************99555544.4899********************875435444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.9E-5179IPR003340B3 DNA binding domain
CDDcd100171.22E-14177No hitNo description
SuperFamilySSF1019369.22E-17177IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-14177IPR003340B3 DNA binding domain
PROSITE profilePS5086314.269179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-17278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-17222323IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-15224323IPR015300DNA-binding pseudobarrel domain
CDDcd100174.83E-16225323No hitNo description
SMARTSM010191.0E-8226325IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308226325IPR003340B3 DNA binding domain
PfamPF023621.9E-12226313IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MIPRKFSENA RGKLHETVTL KGPSGTTTWQ VRLTGCGEDL YLKDGWTEFV NAFSLEENDI  60
LIFKYKTGSC FDVLVFDQRT LCEKETSYFI RRCDHLRPAP ANNNIISSHE LGSMKECQVD  120
VDEYLSEDVH VTPPKKPKKD LDNDLNDVFV NVGMAKATPR NKEPIFSWVP VKLPSPVVAD  180
QKQKVQKRTA GEIDVMKYVF GSSCVTEERM KEVLQTARKE LTENSFLVVM RPTHVSRKFF  240
LSLPAEWSTK HLNCKKQVIY LGTNGKRWPK KVIFSSKGRG GLSYGWKQFA MENRLEELDV  300
LVFKLATKTD DHEPVQLDVS IFRIAKVP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-45B3 family protein