PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca13547.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 456aa    MW: 50633.2 Da    PI: 4.9382
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca13547.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.11.1e-124014210128
         NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvf 108
                 +d+e++v  L k  +g++ +  +v+ +v+ ++++P++Lp      +  wyf     +k +        +++g+Wk  g   ++++ + +l+g + t+ f
  Dca13547.1  40 SDQEIIVS-LDKIQHGSPPPS-NVLVDVNPFQHKPSSLP------DGIWYFVLLDTEKGS-------EAETGVWKVLGDGCQIYE-DCKLTGWRSTFEF 122
                 69999966.666556666555.99**************9......345777777665533.......45789*************.999********** PP

         NAM 109 ykgrapkgektdWvmheyrl 128
                 y+g+  + ++tdWvm+ y +
  Dca13547.1 123 YQGSLDDRNRTDWVMQKYWI 142
                 ******************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.39831162IPR003441NAC domain
SuperFamilySSF1019413.53E-1838162IPR003441NAC domain
PfamPF023658.3E-641140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MVLLCGYHRI PGIATLENFG RDVMCRGGPS SLSDIGIYWS DQEIIVSLDK IQHGSPPPSN  60
VLVDVNPFQH KPSSLPDGIW YFVLLDTEKG SEAETGVWKV LGDGCQIYED CKLTGWRSTF  120
EFYQGSLDDR NRTDWVMQKY WISQKGTHGV EVSGCLCRVF HRDGEHREQK RQRHLEPGNV  180
RGQEGLVQEE YNSHDSQNIS AKGSLLQEEH NSHDTLTIPA KESIVKEEHN RPDTLNIAAK  240
ESLVQEEHNC LDTQNIRDKG SEVVERDDNT KLSAPDENLE DLDCICRGDY LELLDLVNPA  300
SSASSSDNSS CVSMASDEMF DYLELLNDLE PENNKQCQSS STSCHLSVST SSVPKVVVSP  360
AARGSLVTPV ESHSPEQSLN LKDPSSDPVV EGKCNDKSTT LHAGNNHKDQ GVNSTEAAPN  420
YQEGSTSKTS VSDKGKKIAH GKMKMLKKKY LCFFPF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.23e-11NAC domain containing protein 52