PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca13635.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bZIP
Protein Properties Length: 332aa    MW: 36962.5 Da    PI: 9.9259
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca13635.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.3e-104487245
                XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                k+ k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Dca13635.1 44 KDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 87
                567899*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.4E-84090No hitNo description
SMARTSM003383.2E-943106IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4154589IPR004827Basic-leucine zipper domain
PfamPF001702.0E-74587IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.44E-74790No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
PfamPF141446.0E-33129204IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MADGSPRTDI SSDADTDDRN KRFKRDQLVG PTASDSSGRS KDPKDQKTLR RLAQNREAAR  60
KSRLRKKAYV QQLESSRLKL TQLEQELQRA RQQGIFISST GDQAHSTGGN GAMAFDVEYS  120
RWLEDHNRQV NELRAAVNAH AGDTELRVIV DGVLAHYDDI FRLKANAAKN DVFHLLSGMW  180
KTPAERCFLW LGGFRSSELL KLLSQQLEPL TEQQLAAIKN LQQSSQEAED ALSQGMDALQ  240
QSLAETLSSG SLGSSGSSGN VASYMGQMAM AMGKLGTLEG FIRQADNLRQ QTLQQMHRIL  300
TTKQSARALL AIHDYFSRLR ALSSLWLARP KE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027354195.10.0transcription factor TGA2.2-like isoform X2
RefseqXP_027354196.10.0transcription factor TGA2.2-like isoform X2
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A371F7B70.0A0A371F7B7_MUCPR; Transcription factor TGAL1 (Fragment)
TrEMBLA0A3Q0ERI90.0A0A3Q0ERI9_VIGRR; transcription factor TGA2.2 isoform X3
STRINGXP_007133721.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-155TGACG motif-binding factor 6