PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca13636.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family Trihelix
Protein Properties Length: 329aa    MW: 36489.5 Da    PI: 7.906
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca13636.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.64.5e-1549132186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++  v++L+ea+++++   +r+klk+++We+v+k +    + ++  ++++qCk+k+e+++kry+ + +++        s++p+f++l+
  Dca13636.1  49 EWSEGAVMTLLEAYESKWILRNRAKLKGQDWEDVAKCVssrsSNTKSPKTQTQCKNKIESMKKRYRSECASSDT------SSWPLFSRLH 132
                 5*************************************87777777889999**************99998885......57*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.6E-1947134No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MERETTTQDD DQNPSTKVEQ PPRKQLGSSV PGGSGGGGGG GGDRLKRDEW SEGAVMTLLE  60
AYESKWILRN RAKLKGQDWE DVAKCVSSRS SNTKSPKTQT QCKNKIESMK KRYRSECASS  120
DTSSWPLFSR LHRLLRGSGA VVSSHASLPA QPVELSPVAL TCLPPQPPSV ELADNSHESN  180
DVEPMVKENE EIAEKTSDRK NNNDEQHEHH EPDSSSSTPA LYSNDQKGNI SLRSRKRKRR  240
RRVDSSGSGS WEDVAESIRC VANAVVRSEQ ARMDTMKEVE RMRVEAEVKR GEMELQRTQI  300
IADTQLEIAR LFASALGKNV DDSLKIGKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234239RKRKRR
2235240KRKRRR
3235241KRKRRRR
4236240RKRRR
5237242KRRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670500.11e-127PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A0K9R5821e-122A0A0K9R582_SPIOL; Uncharacterized protein
STRINGXP_010670500.11e-126(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-85sequence-specific DNA binding transcription factors