PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca13740.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 516aa    MW: 58089.1 Da    PI: 7.4723
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca13740.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.41.2e-35531951128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........s 80 
                 lp+G++F+Ptd+el+ e+L++kve+k+      +   + +i+++d    i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++        +
  Dca13740.1  53 LPAGVKFDPTDQELI-EHLEAKVEAKSfkshplI---DeFIPTIDgedgICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqggE 146
                 799************.99*********5554332...133444434445**********.555666799******************733345555447 PP

         NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  +W++tgk+++vl+ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Dca13740.1 147 TRWHKTGKTRPVLV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 195
                 78************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-3848214IPR003441NAC domain
PROSITE profilePS5100532.93853214IPR003441NAC domain
PfamPF023653.7E-1654195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MNSSSSNKAQ LSSISSASDL IDAKLEEHQL CGSKHCPGCG HKLEGSKPDW VGLPAGVKFD  60
PTDQELIEHL EAKVEAKSFK SHPLIDEFIP TIDGEDGICY THPEKLPGVT RDGLSRHFFH  120
RPSKAYTTGT RKRRKIQTEC DLQGGETRWH KTGKTRPVLV NGKQKGCKKI LVLYTNFGKN  180
RKPEKTNWVM HQYHLGQHEE EREGELVVSK IFYQTQPRQC NNWTERSSTT TADGGVVGGG  240
EVSGRRESGS GSTSSSKEVV THHYTTTQDN NNIINSNSNS NNNRMSILDG VIVAGGGSGS  300
ISSYMTTMDI QQQQQQQQQH FKGVDQFGFV PFRKGFDEAG IGDASTTCDD RQQQQHQHHR  360
HLQHHQHQQQ QQRQQQQHQQ QHHNVVHLIT QAMQAPQEQH LHHQHHQAQH QTISSSAFHI  420
SRPSHPISQI IAPPPLHHAS LILDDDPFHV SRLMLQNEAF QQQQQQQQHE QQQQQQTQEG  480
TGEEQHHKMV GRSAAGLEEI IMGCTSGVKQ VSLFFS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688374.10.0PREDICTED: NAC domain-containing protein 35 isoform X1
RefseqXP_010688375.10.0PREDICTED: NAC domain-containing protein 35 isoform X2
RefseqXP_019107023.10.0PREDICTED: NAC domain-containing protein 35 isoform X1
RefseqXP_019107024.10.0PREDICTED: NAC domain-containing protein 35 isoform X1
TrEMBLA0A0S3QX210.0A0A0S3QX21_PHAAN; Uncharacterized protein
STRINGXP_010688374.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-132NAC domain containing protein 75