PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca13749.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 146aa    MW: 16738.2 Da    PI: 10.7141
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca13749.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.6e-084692347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47
                      WT +E  + vd+++++G g+W++I +t+     R + +++++w+++
       Dca13749.1 46 QWTLDEVVKVVDGIARFGQGRWTAIQKTFFspSCRNPTDIRDKWRNL 92
                     7****************************999889**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-113797IPR009057Homeodomain-like
PROSITE profilePS5129412.0654097IPR017930Myb domain
SMARTSM007178.3E-54395IPR001005SANT/Myb domain
CDDcd116602.64E-144594No hitNo description
PfamPF002495.3E-64692IPR001005SANT/Myb domain
SuperFamilySSF466894.52E-1246102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MSQKNCHGKS SKRKEAKASK RKRELDSDDD YRPTASCFRK KKCNKQWTLD EVVKVVDGIA  60
RFGQGRWTAI QKTFFSPSCR NPTDIRDKWR NLVKSNLGNS KGERKDRRQK EGTLCLPNTI  120
VERIQELAMA IPQCTSAHKV KLPDAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12041RKRELDSDDDYRPTASCFRKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021715742.14e-32uncharacterized protein LOC110683658
TrEMBLA0A0K9QGE22e-29A0A0K9QGE2_SPIOL; Uncharacterized protein
STRINGXP_010684090.14e-29(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.25e-20TRF-like 6